Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1442 ATGGAATGTTTGAAAGAGCAGTTGATTCTAAATGTTGACTTGGATTTGGAGACTCGGAACGTAGTGCCGGTGACCATGATGACGGCGGAGACCGCTGCCTCTCCTCCCATCCTCGGCGACGAGCCCAATCCGGTCGGTTATCAGGAGAGGTTTCGGGTGCTTGGAGATTTGTTGACAAACTTTCAGAAAGTTGTTTTTGGTACAAAGCTGGCTGTGCTCTTCCCCGCCATTCCTTTGGCAATGGCAGCAGATTCTTTCAACTTTGGAAGAACTTGGATATTTGGCTTGAGCTTACTTGGACTCGCCCCTCTTGCAGAACGTGTCAGTTTCTTGACCGAACAAATCGCATACTTCACAGGGCCAACAGTTGGTGGGCTTCTGAATGCAACATGTGGGAATGCAACAGAGTTGATAATTGCTTTGTTTGCTTTGAATCAAAACAAAATCCATGTCTTGAAGTTCTCTCTTTTGGGTTCTATTCTTTCCAATCTTCTTTTGGTCCTTGGATCCTCTCTTCTCTTTGGAGGCTTATCCAACCTCAACAAAGAACAAAGATTCAACCATAAGGTGGCAAATGTAAGCTGTCTTTTGTTGGTGCTTGGATTAGTGAGCCAGATGCTGCCATTGATGTTTAGATACGAATTAAGGGAGAAAGAGGCAAGTGAAGAAGATGGTTCATTACTAATGAAGTTATCAAGAATTTGTAGCATTCTCATGCTTATTGCATACATTGCCTACATATTCTTTCAACTAAAATCCCACCAACAATTGCCTCATCTTCCACAGGATGAAGAAGAAGAAGATGAAGATGAAGAAAAGGCAGAGATTGGATTTTGGAGCTCATTTTTTTGGTTGATTGGGATGACCATTGTCATAGCAATATTATCAGAATATATTGTGGGAACAATTGAGGATGCATCCAATTCATGGGGGATTTCTGTGAGCTTCATAGGCATAATTCTGCTGCCTATTGTGGGAAATGCAGCAGAGCATGCTGGATCTATTATATTTGCTGTCAAGAACAAGTTGGATATAACAATGGGGATTGCTTTGGGGTCTGCAACTCAAATTTCTACGTTTGTGGTTCCAATGAGTGTGATTGTTGGATGGTGTATTGGCATCAGAATGGATCTTGATTTTGGTATTCTTGAAACTGGTTCTCTTGCCTTGACTATTATTATAACAACCTTCTCTTTACAGGATGGAAGTTCACACTACATTAAAGGAGTGGTGCTTTTGCTCTGCTATGTTGCAATATCTGCAGCTTTTTTTGTTCAAAATTCTCCAAACTTGAAAGAAAATTTATGTGAATTAAAAGTAAATATGAAGGCTTCTAGATCAATCAAACCAAAGCCATGA 1359 40.77 MECLKEQLILNVDLDLETRNVVPVTMMTAETAASPPILGDEPNPVGYQERFRVLGDLLTNFQKVVFGTKLAVLFPAIPLAMAADSFNFGRTWIFGLSLLGLAPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIALFALNQNKIHVLKFSLLGSILSNLLLVLGSSLLFGGLSNLNKEQRFNHKVANVSCLLLVLGLVSQMLPLMFRYELREKEASEEDGSLLMKLSRICSILMLIAYIAYIFFQLKSHQQLPHLPQDEEEEDEDEEKAEIGFWSSFFWLIGMTIVIAILSEYIVGTIEDASNSWGISVSFIGIILLPIVGNAAEHAGSIIFAVKNKLDITMGIALGSATQISTFVVPMSVIVGWCIGIRMDLDFGILETGSLALTIIITTFSLQDGSSHYIKGVVLLLCYVAISAAFFVQNSPNLKENLCELKVNMKASRSIKPKP 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 52369575 52373960 - evm.model.ptg000005l.75 HCH3g1442 542170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1442 452 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 54 429 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
HCH3g1442 452 Pfam Sodium/calcium exchanger protein 91 251 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g1442 452 Pfam Sodium/calcium exchanger protein 281 424 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g1442 452 FunFam Vacuolar cation/proton exchanger 268 425 - -
HCH3g1442 452 NCBIfam calcium/proton exchanger 75 424 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
HCH3g1442 452 Gene3D - 121 263 IPR044880 -
HCH3g1442 452 Gene3D - 271 425 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1442 HCH-Chr3:52369575 HCH9g0774 HCH-Chr9:5290648 1.10E-124 dispersed
HCH11g0094 HCH-Chr11:1180591 HCH3g1442 HCH-Chr3:52369575 1.20E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1442 K07300 - csv:105436053 500.36