Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1454 ATGTCAGTCTCCGTTGCCGTTTCCAACTCGCCGGGATTTTCACCGTCGTCGTCGATGTTTTGCCCGGGGCCGGAATCTCTTACTCTGACTTTGGCTCATTTGAAATCTTCACAGTCCTCTTCTACTTCATGTTCTTCGTCTCCTTCTTCTCCGTCTTCGCCTTTCCGGCTTCGGTTTCCGAAACCCCCATCTGGGTTCTCGTCGGCGGCGGTTTCTACATCTTCTCCGTCGTCTTCGTCGTCGACTAATACGATATTGAAGAGAAAGAGACCGGCGAGGCTTGATATTCCAATGACACAGTTGAGTTTTGGAGCCGCGGCGCAACCGACGCCGGTGTCGTCGTCGTTTAGGGAAGTCGTGGAGGCTGAGAGAGATGGATATTCTGTGTATTGTAAGAGAGGAAGGAGAAGAATTTCCATGGAAGATCGATTCACTGCCATCGCTGATTTTCAAGAAAATTCTAAAGAGGGATTTTTTGGTGTATTTGATGGACATGGAGGTGCGAAAGCTGCAGAATTTGCAGCAGAAAATTTAGGAAAGAATATTTTGAATGAATTAGAAAGGGAAAGGGAAAGAATGGATGAAAATGAGAATGATTTAAGGATGGAGCAGGCCATGAAGTATGGTTATCTCACCACGGATTCTGATTTCCTAAAAGAAGACCAACGTGGTGGCTCTTGCTGTGTTACAGCTTTGATCAAGAAAGGCAACCTTGTAGTCTCCAATGCGGGCGACTGCCGTGCCGTTATCAGCACGGAAGGCGTCGCGGTTGCCGTCTCTTCCGATCACCGGCCTTCAAGGGAAGATGAAAGACAGAGAATTGAGTCCACGGGTGGATATGTTGATCTCTGCAATGGTGTATGGAGAGTCCAAGGATCTCTAGCCGTAACAAGAGGGATTGGTGATCGTCATCTCAAACAATGGATCACGGCCGAGCCCGAAACGAAGGTGATTCGGATCGAACCGAAACACGAGTTCTTGATATTGGCTTCGGATGGTTTGTGGGAATCAGTTAGCAATCAGGAAGCAGTAGACATTGTTCATCCATTGTGTGTAGGCATTGAGAAGGCAGAGCCATTGGTGGCATGTAAAAAGCTTGTGGAGCTTTCTTTATCAAGAGGATCAGTAGATGATATAAGTGTATTAATAATCCAATTGCCTAACTTCATCTAA 1173 46.72 MSVSVAVSNSPGFSPSSSMFCPGPESLTLTLAHLKSSQSSSTSCSSSPSSPSSPFRLRFPKPPSGFSSAAVSTSSPSSSSSTNTILKRKRPARLDIPMTQLSFGAAAQPTPVSSSFREVVEAERDGYSVYCKRGRRRISMEDRFTAIADFQENSKEGFFGVFDGHGGAKAAEFAAENLGKNILNELERERERMDENENDLRMEQAMKYGYLTTDSDFLKEDQRGGSCCVTALIKKGNLVVSNAGDCRAVISTEGVAVAVSSDHRPSREDERQRIESTGGYVDLCNGVWRVQGSLAVTRGIGDRHLKQWITAEPETKVIRIEPKHEFLILASDGLWESVSNQEAVDIVHPLCVGIEKAEPLVACKKLVELSLSRGSVDDISVLIIQLPNFI 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 52510969 52512452 + evm.model.ptg000005l.63 HCH3g1454 542182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1454 390 Coils Coil 179 206 - -
HCH3g1454 390 ProSitePatterns PPM-type phosphatase domain signature. 158 166 IPR000222 GO:0043169(InterPro)
HCH3g1454 390 PANTHER PROTEIN PHOSPHATASE 111 384 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH3g1454 390 SMART PP2C_4 119 384 IPR001932 -
HCH3g1454 390 ProSiteProfiles PPM-type phosphatase domain profile. 126 386 IPR001932 -
HCH3g1454 390 MobiDBLite consensus disorder prediction 1 91 - -
HCH3g1454 390 CDD PP2Cc 126 386 IPR001932 -
HCH3g1454 390 MobiDBLite consensus disorder prediction 1 54 - -
HCH3g1454 390 MobiDBLite consensus disorder prediction 66 87 - -
HCH3g1454 390 FunFam probable protein phosphatase 2C 25 119 389 - -
HCH3g1454 390 SUPERFAMILY PP2C-like 116 388 IPR036457 -
HCH3g1454 390 Gene3D - 119 389 IPR036457 -
HCH3g1454 390 Pfam Protein phosphatase 2C 131 379 IPR001932 -
HCH3g1454 390 SMART PP2C_SIG_2 142 386 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1058 HCH-Chr12:7936003 HCH3g1454 HCH-Chr3:52510969 7.80E-33 dispersed
HCH13g0027 HCH-Chr13:200460 HCH3g1454 HCH-Chr3:52510969 2.40E-67 dispersed
HCH3g1454 HCH-Chr3:52510969 HCH4g0057 HCH-Chr4:335858 6.30E-57 dispersed
HCH9g1262 HCH-Chr9:35875538 HCH3g1454 HCH-Chr3:52510969 1.90E-34 transposed
HCH1g0356 HCH-Chr1:50431583 HCH3g1454 HCH-Chr3:52510969 1.90E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1454 K17506 - csv:101207841 550.051