Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1457 ATGAACCCATCACAGGAAAATGTTGAAACAGAAGGAACATCTCAAAAGGATGTGAAGAATAAGTCATACAGAAGTGTGCTTATGCTGGCTTATCAAAGTCTAGGAGTGGTTTATGGAGACCTCAGCACCTCCCCTCTATATGTTTACAAAACCACCTTCTCTGGGAAATTGAGCCTCCATGAGAATGATGAAGAAATTTATGGGGTGCTATCCTTCATCTTCTGGACGTTTACATTCATTGCTCTCTTCAAATATGTTTTTATTGTAATGTCTGCTGACGATAACGGTGAAGGGGGTACCTTTGCACTGTACTCCCTTCTATGCAGACATGCAAGATTATGCATTCTACCGAATCAAGAGGCTGGAGATGAAAATTTATCTGCATATGCAACCAAGGGAATCTCAGACACAAGGCCGAGTGCCGCTCTGAAGTCTTTCTTTCAGCTGCATCCATCAATCCGGAAAGGATTCTTGGTTTTCGTTCTCCTAGGAACCTGCATGGCTATTGGTGATGGAGTGCTAACTCCTGCAATATCAGTTCTTTCAGCAGTCTCAGGAGTCCAACAAAAGATTGCAGAACTCCATGAGAATTATGTTGTTTTAATCTCATGCGTCATCTTAGTTGGGCTATTCTCCCTTCAGCATTGTGGAACACACAAGGTCGCTTTCATGTTTGCTCCAATTATCACAACATGGCTTGTGTGTATCGGCGGTATCGGGATGTATAATATTATCAAGTGGAATCCATGTATATATCATGCTCTATCTCCAGTTTACATGCTGAAGTTCCTTAGAAGCATGGGTGTTGAAGGATGGATTTCGTTAGGTGGAGTGGTTCTCTCAATAACAGGTGTCGAGACTATGTTTGCTGATTTGGGCCACTTCTCTTCACTTTCAATCAAGATTGCTTTCACATTTCTTGTATATCCCTCCTTGATCCTTGCTTATATGGGTGAGGCTGCATTTCTCTCTAAGCATCATGAAGATATACAGAGAAGCTTCTACAAAGCGATACCTGAAGCCGTGTTTTGGCCCGTGTTCATTGTGGCGACTTTTGCTTCTGTTGTGGGAAGTCAAGCAGTGATTTCGGCTACATTTTCCCTCGTAAATCAGTGCTGTGCTTTGAATTGCTTTCCGTATGTGAAAACTATGCACACTTCAAATAAGATATATGGGCAGATTTACATCCCAGAAATTAACTGGATGCTAATGTGCCTTTGTTTAGCTGTGACAATTGGCTTGAGAGACACAAACATGATAGGCCATGCATATGGGCTGGCAGTCACCACTGTTATGTTTGTCACAACTTGCTTGATGACACTTGTGATAATAATTGTTTGGAAGCAGAGGATAGTCATTGCAATTGCATTTTTAATGTTTTTTGGGTCAATAGAACTACTTTATATCTCAGCCTCAATCAGCAAAGTTCCTGAAGGCGGGTGGATCCCTCTCGTGCTGTCGTCAGTTTTTATGTGTTCAATGTGTACATGGAACTATGGAACAATGAAGAAACAAGAATACGACGATGAAAACAAAGTGTCGATGAATAGGATACTTTCTTCCGGCTCTAGCCTTGGCATAGCACGTGTGCCCGGGATTGGACTCATCTACACTAACCTGGTGACTGGCATTCCCGCTGTTTTTGGACAGTTTGTGACCACACTGCCTGCATTTCATCAAGTGCTTGTTTTTGTTTGTATAAAATATGTTCAAGTTCCCCATATTAGTGAAGAAGAACGTTTGCTCATTACAAGGGTGGGGCCAAACGAGTATGGCATGTTCCGGTGCATCGTCAGGTACGGTTACAGGGATTTGCTGCAGGAGAACTACAATTTTGAGAACAGATTGGTGTTTGAATTAGTGAATTATGTAGAAAAAGAAAATCATTTTTGGATTCCAACGACCCAATTCTCTGGAGGGTATGAAAAATCAGAAGAAGAAGAAGAAGCTTTTGAAGTAGTGGAGCAAACTTTCATAAATTCAAATCATCAAGATAATATGTTGCAGTCTTCTTGCAAATATGAATTGATGAATTCTGCAGCAGATGATGTAGAGAATTCATTATACAAAGAGGAAGCCATGCAGATATTGAGAGCCAAAGAATCAGGAATCACATATATTTTTGGACATTGTTCAGTCAAGGCAAAGAAGTCATCCTCCATTTTGAAGAAGTTGGCCATTGACATTGTTTATGCTTTTTTGAATCAGAATTGTAGAGAGCCTGAAGTTATTCTGAATGTGCCTCACACTTCTCTTTTGGAAGTTGGTATGGTGTATTGTGTATAG 2286 40.77 MNPSQENVETEGTSQKDVKNKSYRSVLMLAYQSLGVVYGDLSTSPLYVYKTTFSGKLSLHENDEEIYGVLSFIFWTFTFIALFKYVFIVMSADDNGEGGTFALYSLLCRHARLCILPNQEAGDENLSAYATKGISDTRPSAALKSFFQLHPSIRKGFLVFVLLGTCMAIGDGVLTPAISVLSAVSGVQQKIAELHENYVVLISCVILVGLFSLQHCGTHKVAFMFAPIITTWLVCIGGIGMYNIIKWNPCIYHALSPVYMLKFLRSMGVEGWISLGGVVLSITGVETMFADLGHFSSLSIKIAFTFLVYPSLILAYMGEAAFLSKHHEDIQRSFYKAIPEAVFWPVFIVATFASVVGSQAVISATFSLVNQCCALNCFPYVKTMHTSNKIYGQIYIPEINWMLMCLCLAVTIGLRDTNMIGHAYGLAVTTVMFVTTCLMTLVIIIVWKQRIVIAIAFLMFFGSIELLYISASISKVPEGGWIPLVLSSVFMCSMCTWNYGTMKKQEYDDENKVSMNRILSSGSSLGIARVPGIGLIYTNLVTGIPAVFGQFVTTLPAFHQVLVFVCIKYVQVPHISEEERLLITRVGPNEYGMFRCIVRYGYRDLLQENYNFENRLVFELVNYVEKENHFWIPTTQFSGGYEKSEEEEEAFEVVEQTFINSNHQDNMLQSSCKYELMNSAADDVENSLYKEEAMQILRAKESGITYIFGHCSVKAKKSSSILKKLAIDIVYAFLNQNCREPEVILNVPHTSLLEVGMVYCV 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 52556885 52560916 + evm.model.ptg000005l.60 HCH3g1457 542185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1457 761 Pfam K+ potassium transporter C-terminal domain 531 759 IPR053952 -
HCH3g1457 761 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 13 761 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
HCH3g1457 761 Pfam K+ potassium transporter integral membrane domain 29 520 IPR053951 -
HCH3g1457 761 NCBIfam potassium uptake protein 29 760 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1457 HCH-Chr3:52556885 HCH9g0158 HCH-Chr9:943132 3.00E-228 dispersed
HCH3g1457 HCH-Chr3:52556885 HCH9g0012 HCH-Chr9:101601 2.70E-237 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1457 K03549 - csv:101222845 1256.12