Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1469 ATGTCTGAGTCTGAGAGTAAGAAGGGTGAGTTAGTGTGTGTCACCGGCGGCAGTGGCTGCATCGGATCATGGCTCGTTCATTACCTTCTCCTCCGTGGCTACTCCGTTCACGCCACCGTTCAAAATCTCCAGAATGAAGACGAAACGAAGCATCTAGAAGCATTACAAGGAGCAGATTCTCATCTCCGTCTCTTCCAAATCGATCTTCTCGATTACGACTCCATCCTCCCCGCCGTCACCGGTTGCGCCGGTGTCTTCCACCTTGCCTCTCCCTGCACCGTTTATACTGTTGAAGATCCTCAGAGGGATCTTTTGGATCCTGCTCTCAAAGGAACTATAAACGTTTTGACGGCGGCTAAAGAAGCTGGAGTACAACGTGTCGTCGTTACGTCGTCTGTTTCCGCTATTTTTCCCAACCCTCACTGGCCAGCTGGTGTTGTTCTCAATGAAGATTCCTGGACTGATGCTGATTATTGCAAGCAAAAGGGCTTATGGTATTCGCTTTCAAAAACTATAGCAGAACGGGCTGCTTGGGATTTTTCCAAGGAGAAGGGATTGGATTTGGTGGTAATTAATCCGGGCACAGTTATGGGCGCCGTGATTTCTCCCAGACTTAATGCCAGCATGACAATGCTTTTAAAACTTCTCGAGGGGACCACTGACGCATTCGAGGACTTGTATATAGGAGTAGTGCACTTTAGAGACGTTGCATTAGCACATATTTTGGTCTATGAAAACAAATCGGCTACTGGAAGGCACATATGTGCCGAGTCGATATCTTGTTACTCTGACTTTGCGACAAAGGTTACTGAACTCTACCCTCAATATAAGACACCCAGACCATTTAAGAACTCGCAACCTAACTTGGTGAGGGCAAAAGATGGATCTAAGAAGCTCATAGACCTGGGCTTCAAATTCATCACAATGGAGGAAATCATCAAGGAAGCCGTTGAGGATTTGAAGAGCAAGGGTTTTATTTCCTAA 984 46.65 MSESESKKGELVCVTGGSGCIGSWLVHYLLLRGYSVHATVQNLQNEDETKHLEALQGADSHLRLFQIDLLDYDSILPAVTGCAGVFHLASPCTVYTVEDPQRDLLDPALKGTINVLTAAKEAGVQRVVVTSSVSAIFPNPHWPAGVVLNEDSWTDADYCKQKGLWYSLSKTIAERAAWDFSKEKGLDLVVINPGTVMGAVISPRLNASMTMLLKLLEGTTDAFEDLYIGVVHFRDVALAHILVYENKSATGRHICAESISCYSDFATKVTELYPQYKTPRPFKNSQPNLVRAKDGSKKLIDLGFKFITMEEIIKEAVEDLKSKGFIS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 52735243 52737878 - evm.model.ptg000005l.48 HCH3g1469 542197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1469 327 Pfam NAD dependent epimerase/dehydratase family 12 249 IPR001509 -
HCH3g1469 327 Gene3D - 2 327 - -
HCH3g1469 327 CDD FR_SDR_e 12 304 - -
HCH3g1469 327 FunFam Cinnamoyl-CoA reductase 1 5 327 - -
HCH3g1469 327 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 320 IPR036291 -
HCH3g1469 327 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 11 318 IPR050425 GO:0016616(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0777 HCH-Chr11:37447691 HCH3g1469 HCH-Chr3:52735243 3.00E-84 dispersed
HCH3g1469 HCH-Chr3:52735243 HCH6g0289 HCH-Chr6:4083619 6.00E-69 dispersed
HCH3g1469 HCH-Chr3:52735243 HCH4g1266 HCH-Chr4:8712495 3.20E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1469 - - - 0.0