Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH3g1473 | ATGAGAGGTTCCTCTCCTTGCGCTTCCTGTAAACAGTTAAGGCGTCGCTGCTCCAATGAGTGTATCTTTGCCCCCTTCTTCCCTCCTGATGAACCCCAAAAGTTTTCCATTGTTCATAAGGTCTTTGGTGCTAGCAATGTCAGCAAGATGTTGCAGGAGCTTCCAGTTCATCAAAGAGCAGATGCTGTAAGCAGCTTGGTTTATGAAGCAAATGCCAGAGAACGAGACCCGGTTTATGGGTGTGTTGGAACAATAGCTTTCCTTCAAAATCAACTCTCTCAAATCCAAATGCAACTGGCCCAAGCTCAGACAGAATTGCTTAGCATTCAGATGCAGCAACAACCTACGTTATCAGCAACCCACATTCCCAGCAACCAAGATGAGAATTCACTTCCTTTATCTGATAATTATAGCCTTAACAATGATATTAACTTTTCTGAATCCCACGGCTTAGCATCTTCTAGCTCCTTAATCCAAGAATATCTTCATAACTTAGAGTCTTCTTGGAGTTGA | 513 | 42.88 | MRGSSPCASCKQLRRRCSNECIFAPFFPPDEPQKFSIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARERDPVYGCVGTIAFLQNQLSQIQMQLAQAQTELLSIQMQQQPTLSATHIPSNQDENSLPLSDNYSLNNDINFSESHGLASSSSLIQEYLHNLESSWS | 170 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 52775859 | 52776488 | + | evm.model.ptg000005l.44 | HCH3g1473 | 542201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH3g1473 | 170 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - | |
| HCH3g1473 | 170 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
| HCH3g1473 | 170 | Coils | Coil | 85 | 112 | - | - | |
| HCH3g1473 | 170 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 129 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH2g0930 | HCH-Chr2:52711609 | HCH3g1473 | HCH-Chr3:52775859 | 1.90E-42 | dispersed | |
| HCH3g0911 | HCH-Chr3:7895873 | HCH3g1473 | HCH-Chr3:52775859 | 1.00E-40 | dispersed | |
| HCH3g1270 | HCH-Chr3:48096045 | HCH3g1473 | HCH-Chr3:52775859 | 4.60E-34 | dispersed | |
| HCH3g1271 | HCH-Chr3:48172352 | HCH3g1473 | HCH-Chr3:52775859 | 1.00E-36 | dispersed | |
| HCH3g1473 | HCH-Chr3:52775859 | HCH8g1410 | HCH-Chr8:48776485 | 1.10E-34 | dispersed | |
| HCH1g0339 | HCH-Chr1:49997334 | HCH3g1473 | HCH-Chr3:52775859 | 4.10E-48 | wgd | |
| HCH13g0561 | HCH-Chr13:3994719 | HCH3g1473 | HCH-Chr3:52775859 | 3.50E-31 | wgd | |
| HCH2g0998 | HCH-Chr2:53245819 | HCH3g1473 | HCH-Chr3:52775859 | 2.30E-42 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33387 | PF03195 | LOB | 8.60E-41 | No_clan | HCH | TF |
Pathway information