Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1483 ATGGCTGCTGATAACGGCGAAGAGAAATTATTATCTATGGCTCGTCACATTGCTAAAACCCTAGGTCATAACGAATCCATGGCCGATGATATTTTACAAATCTTTTCCAATTTCGACAATCGTTTTTCCCTCGATAAATTATCATCCGATTCCAATCCCTCTTCTTTACACCGTTCTCTCAATTCTCTTCATCATCAGATCTCTCCCTTCTTAACCCTCGATCATCCCATTTGGTCCGATTCTGCCGATTCCTCCTCTTTCCTCCACGCTATCGATCAATTAATCTCCACGATTCGAGACTGGACTCCTAGGGCTAGAGAGAATTCCGTTGGCGCGTATCTCTCACGCGCTGACGATTTGATGCAACAAGCCATGTTTCGTCTCCAGGAAGAGTTCCGATTGTTGATGGAACGCGGCGGTGAGTCTTTTGAACTGACACGTCATTTTAGGAACGGTGAATCCAGGGCTGATTTTTCCTTTGATTCTGAAGAAGATGATGATGATGATGATGAAGAAAGTGAAGGTAATGATCAGATTCCTATTGCTCATCCTGTTACTGATTTTAATATTTTAATCGATTCTCTTCCTTCGGGAACTATTAGCGATCTTCATGAAATTGCTAAGCGTATGGTGATTGCTGGATTTGAAAAGGAGTGTTCTCATGCTTATAGTAGTTGTAGGAGAGAGTTTCTGGAAGAGAGTCTTTCTAGGTTAGGGTTACAGAAATTGAGTACGGATGAAGTTCAGAAAATGAGATGGTTAGAGCTTGAGGAGGAAATTGAGCGTTGGATGAAAGCTGTTAATGTTTCACTCCGGATTCTATTCCCGAGTGAACGACGGCTCTGTGATCGTGTGTTTTCCGGTCTCTCTTCCGCTGCTGACCTCTCTTTCATGGAGGTCTGCCGTGGATCCGCGATTCAGTTGTTGAATTTTGCTGATGCGGTCTCGATTGGTTCACGGGCGCCCGAACGGCTGTTCAAAGTACTTGACATGTTTGAGACTTTGAGGGATTTGATGCCGGAGTTTGAATCAGTGTTTTCGGATCAGTACTGTTTGTTGCTTAGAAATGAAGCGGTTAGGATTTGGAAGAGGTTAGGAGAAACCATAAAGGGGATTTTTATGGAGCTTGAGAATTTGATCCGTCGTGATCCGGCTAAAGTTCCAGTGCCTGGGGGTGGACTCCATCCGATTACACGTTATGTGATGAATTATCTTCGAGCAGCCTGTCGATCACGACAGACATTGGAGCAAGTTTTTGAAGAAATTGCTCTTCCTTCTAAGGATTATGCCAAGCTTGAGGACAGAGCAGCGGCATCGTCTTCGTTGTCGGTTCAAATGGATTGGATTATGGAGCTTCTTGAAAGCAATTTAGAGGCAAAGTCGAAGATATACAAGGATCTTTCTTTAAGCTCTGTGTTTCTGATGAACAATGGAAGGTATATTGTTCAAAAAGTAAAAGGCAGCGAGTTAGGATCGCTTTTAGGTGACGATTGGATACGGAAACACTCGATGAAAATCCGGCAATACCATGGCAGTTACCTGAAAAGCTCATGGAACAAGGTGATTGGAATATTGAAAGTGGACAGCGGCACATTAGCTCCAAACGCCACCCTAATGAAAGACAAGATCAAATCATTCAATGCACAATTCGAAGAAATCCTTAAAACCCAATCTACATGGGTGATATTCGACCCTCTTCTAAGAGAAGAAGCAAGAATTTCGGTGGCCAAAAACCTACTGCCGGCATATCAAAATTTCATTGCAAGGTACCAGAATTTACCGGAGTTGGGGAAGCGTGCAGACCGATACATGAAGTACACGACGGAGGATGTCGAGGATCGGATTACTGAGATATTCGAAGGAAGTGGAGGATCCAGCGGACGGAAGTGA 1890 43.7 MAADNGEEKLLSMARHIAKTLGHNESMADDILQIFSNFDNRFSLDKLSSDSNPSSLHRSLNSLHHQISPFLTLDHPIWSDSADSSSFLHAIDQLISTIRDWTPRARENSVGAYLSRADDLMQQAMFRLQEEFRLLMERGGESFELTRHFRNGESRADFSFDSEEDDDDDDEESEGNDQIPIAHPVTDFNILIDSLPSGTISDLHEIAKRMVIAGFEKECSHAYSSCRREFLEESLSRLGLQKLSTDEVQKMRWLELEEEIERWMKAVNVSLRILFPSERRLCDRVFSGLSSAADLSFMEVCRGSAIQLLNFADAVSIGSRAPERLFKVLDMFETLRDLMPEFESVFSDQYCLLLRNEAVRIWKRLGETIKGIFMELENLIRRDPAKVPVPGGGLHPITRYVMNYLRAACRSRQTLEQVFEEIALPSKDYAKLEDRAAASSSLSVQMDWIMELLESNLEAKSKIYKDLSLSSVFLMNNGRYIVQKVKGSELGSLLGDDWIRKHSMKIRQYHGSYLKSSWNKVIGILKVDSGTLAPNATLMKDKIKSFNAQFEEILKTQSTWVIFDPLLREEARISVAKNLLPAYQNFIARYQNLPELGKRADRYMKYTTEDVEDRITEIFEGSGGSSGRK 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 52868124 52870013 + evm.model.ptg000005l.34 HCH3g1483 542211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1483 629 PANTHER EXOCYST COMPLEX PROTEIN EXO70 65 622 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
HCH3g1483 629 FunFam Exocyst subunit Exo70 family protein 72 627 - -
HCH3g1483 629 Pfam Exo70 exocyst complex subunit C-terminal 262 616 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
HCH3g1483 629 SUPERFAMILY Cullin repeat-like 78 620 IPR016159 -
HCH3g1483 629 Pfam Exocyst complex component Exo70 N-terminal 81 137 - -
HCH3g1483 629 Gene3D Exocyst complex component Exo70 77 629 - -
HCH3g1483 629 MobiDBLite consensus disorder prediction 159 175 - -
HCH3g1483 629 MobiDBLite consensus disorder prediction 156 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1483 K07195 - - csv:101204511 960.674
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1483 HCH-Chr3:52868124 HCH8g1477 HCH-Chr8:49150171 1.10E-108 dispersed
HCH3g1483 HCH-Chr3:52868124 HCH3g0443 HCH-Chr3:2826887 7.90E-110 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0449 . 1 641 EXO70 exocyst subunit family AT5G03540 73.1 3.1e-274 941.0
HCH9g1220 . 6 226 EXO70 exocyst subunit family AT5G03540 76.6 6.6e-91 332.0
HCH9g0449 . 1 641 EXO70 exocyst subunit family AT5G52340 80.2 1.6e-296 1015.0
HCH9g1220 . 6 226 EXO70 exocyst subunit family AT5G52340 79.6 3.2e-95 346.3
HCH9g0449 . 145 637 EXO70 exocyst subunit family AT5G52350 63.6 5.5e-174 607.8
HCH9g1220 . 6 226 EXO70 exocyst subunit family AT5G52350 61.5 3.6e-72 269.6
HCH3g1483 . 3 629 EXO70 exocyst subunit family AT5G58430 66.2 3.3e-241 831.2
HCH5g1180 . 67 658 EXO70 exocyst subunit family AT5G13150 51.6 4.3e-167 585.1
HCH10g1059 . 82 682 EXO70 exocyst subunit family AT5G13150 50.7 1.4e-162 570.1
HCH10g1059 . 78 682 EXO70 exocyst subunit family AT5G13990 55.1 1.8e-187 652.9
HCH6g0062 . 4 622 EXO70 exocyst subunit family AT1G72470 60.4 1.4e-210 729.6
HCH6g0062 . 9 620 EXO70 exocyst subunit family AT1G54090 59.9 2.3e-202 702.2
HCH6g0062 . 1 621 EXO70 exocyst subunit family AT3G14090 60.0 7.8e-211 730.3
HCH3g0443 . 17 662 EXO70 exocyst subunit family AT5G50380 63.4 2.0e-228 788.9
HCH8g1477 . 9 644 EXO70 exocyst subunit family AT5G50380 62.6 1.1e-226 783.1
HCH4g0369 . 1 683 EXO70 exocyst subunit family AT4G31540 72.6 6.5e-299 1023.1
HCH4g1569 . 6 639 EXO70 exocyst subunit family AT4G31540 50.4 2.9e-182 635.6
HCH1g0497 . 22 630 EXO70 exocyst subunit family AT3G55150 52.3 4.9e-168 588.2
HCH1g0497 . 22 630 EXO70 exocyst subunit family AT2G39380 52.4 7.1e-167 584.3
HCH11g0224 . 23 633 EXO70 exocyst subunit family AT3G09520 53.8 1.7e-173 606.3
HCH2g1121 . 23 606 EXO70 exocyst subunit family AT5G59730 50.4 3.4e-161 565.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009102 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 0 1 33