Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1483 ATGGCTGCTGATAACGGCGAAGAGAAATTATTATCTATGGCTCGTCACATTGCTAAAACCCTAGGTCATAACGAATCCATGGCCGATGATATTTTACAAATCTTTTCCAATTTCGACAATCGTTTTTCCCTCGATAAATTATCATCCGATTCCAATCCCTCTTCTTTACACCGTTCTCTCAATTCTCTTCATCATCAGATCTCTCCCTTCTTAACCCTCGATCATCCCATTTGGTCCGATTCTGCCGATTCCTCCTCTTTCCTCCACGCTATCGATCAATTAATCTCCACGATTCGAGACTGGACTCCTAGGGCTAGAGAGAATTCCGTTGGCGCGTATCTCTCACGCGCTGACGATTTGATGCAACAAGCCATGTTTCGTCTCCAGGAAGAGTTCCGATTGTTGATGGAACGCGGCGGTGAGTCTTTTGAACTGACACGTCATTTTAGGAACGGTGAATCCAGGGCTGATTTTTCCTTTGATTCTGAAGAAGATGATGATGATGATGATGAAGAAAGTGAAGGTAATGATCAGATTCCTATTGCTCATCCTGTTACTGATTTTAATATTTTAATCGATTCTCTTCCTTCGGGAACTATTAGCGATCTTCATGAAATTGCTAAGCGTATGGTGATTGCTGGATTTGAAAAGGAGTGTTCTCATGCTTATAGTAGTTGTAGGAGAGAGTTTCTGGAAGAGAGTCTTTCTAGGTTAGGGTTACAGAAATTGAGTACGGATGAAGTTCAGAAAATGAGATGGTTAGAGCTTGAGGAGGAAATTGAGCGTTGGATGAAAGCTGTTAATGTTTCACTCCGGATTCTATTCCCGAGTGAACGACGGCTCTGTGATCGTGTGTTTTCCGGTCTCTCTTCCGCTGCTGACCTCTCTTTCATGGAGGTCTGCCGTGGATCCGCGATTCAGTTGTTGAATTTTGCTGATGCGGTCTCGATTGGTTCACGGGCGCCCGAACGGCTGTTCAAAGTACTTGACATGTTTGAGACTTTGAGGGATTTGATGCCGGAGTTTGAATCAGTGTTTTCGGATCAGTACTGTTTGTTGCTTAGAAATGAAGCGGTTAGGATTTGGAAGAGGTTAGGAGAAACCATAAAGGGGATTTTTATGGAGCTTGAGAATTTGATCCGTCGTGATCCGGCTAAAGTTCCAGTGCCTGGGGGTGGACTCCATCCGATTACACGTTATGTGATGAATTATCTTCGAGCAGCCTGTCGATCACGACAGACATTGGAGCAAGTTTTTGAAGAAATTGCTCTTCCTTCTAAGGATTATGCCAAGCTTGAGGACAGAGCAGCGGCATCGTCTTCGTTGTCGGTTCAAATGGATTGGATTATGGAGCTTCTTGAAAGCAATTTAGAGGCAAAGTCGAAGATATACAAGGATCTTTCTTTAAGCTCTGTGTTTCTGATGAACAATGGAAGGTATATTGTTCAAAAAGTAAAAGGCAGCGAGTTAGGATCGCTTTTAGGTGACGATTGGATACGGAAACACTCGATGAAAATCCGGCAATACCATGGCAGTTACCTGAAAAGCTCATGGAACAAGGTGATTGGAATATTGAAAGTGGACAGCGGCACATTAGCTCCAAACGCCACCCTAATGAAAGACAAGATCAAATCATTCAATGCACAATTCGAAGAAATCCTTAAAACCCAATCTACATGGGTGATATTCGACCCTCTTCTAAGAGAAGAAGCAAGAATTTCGGTGGCCAAAAACCTACTGCCGGCATATCAAAATTTCATTGCAAGGTACCAGAATTTACCGGAGTTGGGGAAGCGTGCAGACCGATACATGAAGTACACGACGGAGGATGTCGAGGATCGGATTACTGAGATATTCGAAGGAAGTGGAGGATCCAGCGGACGGAAGTGA 1890 43.7 MAADNGEEKLLSMARHIAKTLGHNESMADDILQIFSNFDNRFSLDKLSSDSNPSSLHRSLNSLHHQISPFLTLDHPIWSDSADSSSFLHAIDQLISTIRDWTPRARENSVGAYLSRADDLMQQAMFRLQEEFRLLMERGGESFELTRHFRNGESRADFSFDSEEDDDDDDEESEGNDQIPIAHPVTDFNILIDSLPSGTISDLHEIAKRMVIAGFEKECSHAYSSCRREFLEESLSRLGLQKLSTDEVQKMRWLELEEEIERWMKAVNVSLRILFPSERRLCDRVFSGLSSAADLSFMEVCRGSAIQLLNFADAVSIGSRAPERLFKVLDMFETLRDLMPEFESVFSDQYCLLLRNEAVRIWKRLGETIKGIFMELENLIRRDPAKVPVPGGGLHPITRYVMNYLRAACRSRQTLEQVFEEIALPSKDYAKLEDRAAASSSLSVQMDWIMELLESNLEAKSKIYKDLSLSSVFLMNNGRYIVQKVKGSELGSLLGDDWIRKHSMKIRQYHGSYLKSSWNKVIGILKVDSGTLAPNATLMKDKIKSFNAQFEEILKTQSTWVIFDPLLREEARISVAKNLLPAYQNFIARYQNLPELGKRADRYMKYTTEDVEDRITEIFEGSGGSSGRK 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 52868124 52870013 + evm.model.ptg000005l.34 HCH3g1483 542211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1483 629 PANTHER EXOCYST COMPLEX PROTEIN EXO70 65 622 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
HCH3g1483 629 FunFam Exocyst subunit Exo70 family protein 72 627 - -
HCH3g1483 629 Pfam Exo70 exocyst complex subunit C-terminal 262 616 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
HCH3g1483 629 SUPERFAMILY Cullin repeat-like 78 620 IPR016159 -
HCH3g1483 629 Pfam Exocyst complex component Exo70 N-terminal 81 137 - -
HCH3g1483 629 Gene3D Exocyst complex component Exo70 77 629 - -
HCH3g1483 629 MobiDBLite consensus disorder prediction 159 175 - -
HCH3g1483 629 MobiDBLite consensus disorder prediction 156 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1483 HCH-Chr3:52868124 HCH8g1477 HCH-Chr8:49150171 1.10E-108 dispersed
HCH3g1483 HCH-Chr3:52868124 HCH3g0443 HCH-Chr3:2826887 7.90E-110 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1483 K07195 - csv:101204511 960.674