Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1486 ATGGCCTCCTCTTCAGGGAGCTTAGAAACTTCTGCAAACTCACATCCTTCCTTCACTTTCTCAACTCATCCTTTCATGACCACTAATTCCTTTTCTCAACTTCTACACTCCGATCATCATCTTCATCATCATGATAACAACCCTCCTTCCTCCTCCTCCTCCGCCGCCCTCCACCGTCCTTCCGGTGTTCCTAAATTCAAATCTATTCCACCTCCTTCCTTACCCTTATCTCCTCCTCCTCTTTCTCCTTCTTCCTTCTTTGCCATCCCTCCTGGTTTGAGCCCTGCTGAGCTTCTTGATTCTCCTGTTCTTCTTACCTCTTATCATACTTTGGCATCTCCAACTACAGGAACTTTCCCATCTCAATCATTGAATTGGAAGAGTAATTTAGGATACAATCAACAAAACATCAAAGAGGAAAATAATTACTTCTCCAATTTCTCTTTCCATACTCACACGAAGCCTCCACCAACCTCTTCTTCCAACACCACACAGCAGCAACAACAACAAACATGGAGTTATCAAGAAGAAACCAAGAAACAAGAGGAGAAGAATATAGTAAAGCCAGAGTCAGGATCAATACAGAGCTTCGAGGGTAATTACAGTCAACAATCTCAGACGCTGAATAGAAGATCAGACGATGGTTACAATTGGAGAAAATATGGACAAAAACAAGTAAAAGGAAGTGAAAATCCAAGAAGTTATTATAAGTGTACTTTTCCAAATTGCCCAACAAAGAAAAAAGTTGAAAGATCATTAGATGGACAGATTACTGAAATTGTTTATAAAGGAAGTCATAACCATCCAAAGCCTCAGTCTACGAGGAAGTCGTCTTTTTCAGCCACGAGTTCTCATTCTCATTCTCACACTCTCATTCCTTCAAATCCTGCTGCTGTTGTCAATGAGATCCCTGATCCATCTTTTACTTCTCAAGGCAGTGGACAGTTTGATGGCGTTGGGACACCGGAGAATTCTTCCATATCCATCGGAGACGATGATTTTGATCGTAGCTCACAGAAGACTAAATCTGGAGGTGATGATTATGATGAAGATGAACCGGAGGCTAAAAGATGGAAAAGGGAAGGTGGTGAAAGTGAAGGAATTTCAGGAGGCGGTAGCCGGACGGTGAGAGAGCCGAGAGTTGTCGTTCAAACTACGAGTGATATTGACATTCTTGACGACGGTTACCGGTGGCGCAAGTATGGCCAGAAGGTGGTCAAGGGTAACCCAAATCCTAGGAGTTACTACAAATGCACAAACCCAGGATGCCCAGTGAGAAAACATGTGGAGAGAGCTTCTCATGATTTACGGGCAGTCATTACAACCTACGAGGGCAAGCACAACCATGATGTCCCTCCTGCCCGTGGCAGCGGTCTCCACCGTCCTTTCCCCAACAACAACAATAATGAAGCTCCGGCCGCCGCCATCAGGCCATCGGCGAATAATGGCGGGGGTAACAGCCTTGTACAAGGTCTGAGGATGCAATCTAATTCAGAGAACCAGACACCATTTACCCTGGAAATGGTACAAAATCCTGGTGGGTTTGCATTTCATGAATTTGGAAATTCAATGGGAATGGGAATGGGAATGGCATCTTTTATGAACCAAACACAAGGCAATGAGAATTTGTTCACTAAACCCACCAAGGAAGAGCCAAAAGACCACGACTTGTTCATCCAATCTCTTCTCTGCTGA 1695 44.13 MASSSGSLETSANSHPSFTFSTHPFMTTNSFSQLLHSDHHLHHHDNNPPSSSSSAALHRPSGVPKFKSIPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLTSYHTLASPTTGTFPSQSLNWKSNLGYNQQNIKEENNYFSNFSFHTHTKPPPTSSSNTTQQQQQQTWSYQEETKKQEEKNIVKPESGSIQSFEGNYSQQSQTLNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRKSSFSATSSHSHSHTLIPSNPAAVVNEIPDPSFTSQGSGQFDGVGTPENSSISIGDDDFDRSSQKTKSGGDDYDEDEPEAKRWKREGGESEGISGGGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGLHRPFPNNNNNEAPAAAIRPSANNGGGNSLVQGLRMQSNSENQTPFTLEMVQNPGGFAFHEFGNSMGMGMGMASFMNQTQGNENLFTKPTKEEPKDHDLFIQSLLC 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 52888217 52890727 - evm.model.ptg000005l.31 HCH3g1486 542214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1486 564 MobiDBLite consensus disorder prediction 147 175 - -
HCH3g1486 564 Gene3D WRKY domain 198 272 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g1486 564 MobiDBLite consensus disorder prediction 262 380 - -
HCH3g1486 564 SMART WRKY_cls 212 270 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g1486 564 SMART WRKY_cls 392 451 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g1486 564 MobiDBLite consensus disorder prediction 39 77 - -
HCH3g1486 564 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 134 481 IPR044810 GO:0003700(InterPro)
HCH3g1486 564 MobiDBLite consensus disorder prediction 461 487 - -
HCH3g1486 564 MobiDBLite consensus disorder prediction 267 295 - -
HCH3g1486 564 Gene3D WRKY domain 379 445 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g1486 564 Pfam WRKY DNA -binding domain 213 269 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g1486 564 Pfam WRKY DNA -binding domain 393 450 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g1486 564 MobiDBLite consensus disorder prediction 304 328 - -
HCH3g1486 564 FunFam WRKY transcription factor 33 379 445 - -
HCH3g1486 564 ProSiteProfiles WRKY domain profile. 213 271 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g1486 564 MobiDBLite consensus disorder prediction 446 487 - -
HCH3g1486 564 FunFam WRKY transcription factor 202 272 - -
HCH3g1486 564 MobiDBLite consensus disorder prediction 329 364 - -
HCH3g1486 564 MobiDBLite consensus disorder prediction 188 212 - -
HCH3g1486 564 SUPERFAMILY WRKY DNA-binding domain 384 452 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g1486 564 MobiDBLite consensus disorder prediction 147 216 - -
HCH3g1486 564 ProSiteProfiles WRKY domain profile. 387 452 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g1486 564 SUPERFAMILY WRKY DNA-binding domain 211 271 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0050 HCH-Chr11:920465 HCH3g1486 HCH-Chr3:52888217 9.20E-95 dispersed
HCH1g0893 HCH-Chr1:57396564 HCH3g1486 HCH-Chr3:52888217 1.40E-64 dispersed
HCH3g1486 HCH-Chr3:52888217 HCH6g0924 HCH-Chr6:44014255 1.20E-72 dispersed
HCH3g1486 HCH-Chr3:52888217 HCH2g0990 HCH-Chr2:53176155 3.00E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33389 PF03106 WRKY 3.40E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1486 K13424 - csv:101207158 736.487