Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g1486 | ATGGCCTCCTCTTCAGGGAGCTTAGAAACTTCTGCAAACTCACATCCTTCCTTCACTTTCTCAACTCATCCTTTCATGACCACTAATTCCTTTTCTCAACTTCTACACTCCGATCATCATCTTCATCATCATGATAACAACCCTCCTTCCTCCTCCTCCTCCGCCGCCCTCCACCGTCCTTCCGGTGTTCCTAAATTCAAATCTATTCCACCTCCTTCCTTACCCTTATCTCCTCCTCCTCTTTCTCCTTCTTCCTTCTTTGCCATCCCTCCTGGTTTGAGCCCTGCTGAGCTTCTTGATTCTCCTGTTCTTCTTACCTCTTATCATACTTTGGCATCTCCAACTACAGGAACTTTCCCATCTCAATCATTGAATTGGAAGAGTAATTTAGGATACAATCAACAAAACATCAAAGAGGAAAATAATTACTTCTCCAATTTCTCTTTCCATACTCACACGAAGCCTCCACCAACCTCTTCTTCCAACACCACACAGCAGCAACAACAACAAACATGGAGTTATCAAGAAGAAACCAAGAAACAAGAGGAGAAGAATATAGTAAAGCCAGAGTCAGGATCAATACAGAGCTTCGAGGGTAATTACAGTCAACAATCTCAGACGCTGAATAGAAGATCAGACGATGGTTACAATTGGAGAAAATATGGACAAAAACAAGTAAAAGGAAGTGAAAATCCAAGAAGTTATTATAAGTGTACTTTTCCAAATTGCCCAACAAAGAAAAAAGTTGAAAGATCATTAGATGGACAGATTACTGAAATTGTTTATAAAGGAAGTCATAACCATCCAAAGCCTCAGTCTACGAGGAAGTCGTCTTTTTCAGCCACGAGTTCTCATTCTCATTCTCACACTCTCATTCCTTCAAATCCTGCTGCTGTTGTCAATGAGATCCCTGATCCATCTTTTACTTCTCAAGGCAGTGGACAGTTTGATGGCGTTGGGACACCGGAGAATTCTTCCATATCCATCGGAGACGATGATTTTGATCGTAGCTCACAGAAGACTAAATCTGGAGGTGATGATTATGATGAAGATGAACCGGAGGCTAAAAGATGGAAAAGGGAAGGTGGTGAAAGTGAAGGAATTTCAGGAGGCGGTAGCCGGACGGTGAGAGAGCCGAGAGTTGTCGTTCAAACTACGAGTGATATTGACATTCTTGACGACGGTTACCGGTGGCGCAAGTATGGCCAGAAGGTGGTCAAGGGTAACCCAAATCCTAGGAGTTACTACAAATGCACAAACCCAGGATGCCCAGTGAGAAAACATGTGGAGAGAGCTTCTCATGATTTACGGGCAGTCATTACAACCTACGAGGGCAAGCACAACCATGATGTCCCTCCTGCCCGTGGCAGCGGTCTCCACCGTCCTTTCCCCAACAACAACAATAATGAAGCTCCGGCCGCCGCCATCAGGCCATCGGCGAATAATGGCGGGGGTAACAGCCTTGTACAAGGTCTGAGGATGCAATCTAATTCAGAGAACCAGACACCATTTACCCTGGAAATGGTACAAAATCCTGGTGGGTTTGCATTTCATGAATTTGGAAATTCAATGGGAATGGGAATGGGAATGGCATCTTTTATGAACCAAACACAAGGCAATGAGAATTTGTTCACTAAACCCACCAAGGAAGAGCCAAAAGACCACGACTTGTTCATCCAATCTCTTCTCTGCTGA | 1695 | 44.13 | MASSSGSLETSANSHPSFTFSTHPFMTTNSFSQLLHSDHHLHHHDNNPPSSSSSAALHRPSGVPKFKSIPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLTSYHTLASPTTGTFPSQSLNWKSNLGYNQQNIKEENNYFSNFSFHTHTKPPPTSSSNTTQQQQQQTWSYQEETKKQEEKNIVKPESGSIQSFEGNYSQQSQTLNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRKSSFSATSSHSHSHTLIPSNPAAVVNEIPDPSFTSQGSGQFDGVGTPENSSISIGDDDFDRSSQKTKSGGDDYDEDEPEAKRWKREGGESEGISGGGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGLHRPFPNNNNNEAPAAAIRPSANNGGGNSLVQGLRMQSNSENQTPFTLEMVQNPGGFAFHEFGNSMGMGMGMASFMNQTQGNENLFTKPTKEEPKDHDLFIQSLLC | 564 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 52888217 | 52890727 | - | evm.model.ptg000005l.31 | HCH3g1486 | 542214 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g1486 | 564 | MobiDBLite | consensus disorder prediction | 147 | 175 | - | - | |
HCH3g1486 | 564 | Gene3D | WRKY domain | 198 | 272 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH3g1486 | 564 | MobiDBLite | consensus disorder prediction | 262 | 380 | - | - | |
HCH3g1486 | 564 | SMART | WRKY_cls | 212 | 270 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH3g1486 | 564 | SMART | WRKY_cls | 392 | 451 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH3g1486 | 564 | MobiDBLite | consensus disorder prediction | 39 | 77 | - | - | |
HCH3g1486 | 564 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 134 | 481 | IPR044810 | GO:0003700(InterPro) | |
HCH3g1486 | 564 | MobiDBLite | consensus disorder prediction | 461 | 487 | - | - | |
HCH3g1486 | 564 | MobiDBLite | consensus disorder prediction | 267 | 295 | - | - | |
HCH3g1486 | 564 | Gene3D | WRKY domain | 379 | 445 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH3g1486 | 564 | Pfam | WRKY DNA -binding domain | 213 | 269 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH3g1486 | 564 | Pfam | WRKY DNA -binding domain | 393 | 450 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH3g1486 | 564 | MobiDBLite | consensus disorder prediction | 304 | 328 | - | - | |
HCH3g1486 | 564 | FunFam | WRKY transcription factor 33 | 379 | 445 | - | - | |
HCH3g1486 | 564 | ProSiteProfiles | WRKY domain profile. | 213 | 271 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH3g1486 | 564 | MobiDBLite | consensus disorder prediction | 446 | 487 | - | - | |
HCH3g1486 | 564 | FunFam | WRKY transcription factor | 202 | 272 | - | - | |
HCH3g1486 | 564 | MobiDBLite | consensus disorder prediction | 329 | 364 | - | - | |
HCH3g1486 | 564 | MobiDBLite | consensus disorder prediction | 188 | 212 | - | - | |
HCH3g1486 | 564 | SUPERFAMILY | WRKY DNA-binding domain | 384 | 452 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH3g1486 | 564 | MobiDBLite | consensus disorder prediction | 147 | 216 | - | - | |
HCH3g1486 | 564 | ProSiteProfiles | WRKY domain profile. | 387 | 452 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH3g1486 | 564 | SUPERFAMILY | WRKY DNA-binding domain | 211 | 271 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0050 | HCH-Chr11:920465 | HCH3g1486 | HCH-Chr3:52888217 | 9.20E-95 | dispersed | |
HCH1g0893 | HCH-Chr1:57396564 | HCH3g1486 | HCH-Chr3:52888217 | 1.40E-64 | dispersed | |
HCH3g1486 | HCH-Chr3:52888217 | HCH6g0924 | HCH-Chr6:44014255 | 1.20E-72 | dispersed | |
HCH3g1486 | HCH-Chr3:52888217 | HCH2g0990 | HCH-Chr2:53176155 | 3.00E-108 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33389 | PF03106 | WRKY | 3.40E-25 | CL0274 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH3g1486 | K13424 | - | csv:101207158 | 736.487 |