Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1495 ATGGATTCACAGTACATCAAATGTTTGTGGCGCCTTGCGGTGTTTGTTTCATTGATTAGTTTGAGTTGTGGAAGTTTATCCGCAAATTATTATGAAAAATCATGTCCCAGGTTGCTCTCCACCGTCCGCCGTGAAGTTGTCAAAGCAGTGGGCAAAGAGTATCGCATGGGAGCTTCCTTGCTTCGCCTCCATTTCCATGATTGCTTTGTCAATGGATGCGATGCATCTGTGCTGCTAGATGACACTTCCAACTTCACAGGGGAGAAGACAGCTATCCCAAATAAAGATTCATTGAGAGGTTTTGAAGTGATTGATAACATCAAATCCCTGGTGGAAGCTATTTGTCCTTCTGTTGTTTCTTGTGCTGATATTCTCTCCCTTGCTGCCCGCGACTCCGTTGTTGCCCTAAGCGGGCCTTCGTGGGTAGTAGGGTTGGGAAGGAAGGACTCGACCAACGCTAGCTTCGACAATGCAAACAACGATCTCCCATCTCCCTTTTTGGACTTACCTGATCTTATCTCTGCCTTCTCAAACAAAGGCTTTAACACCAAAGAATTGGTAGCCCTTTCAGGATCCCACACGATAGGCCAAGCCAGATGCTCGATGTTTCGAGTGAGGGCACATAATGAAACCAACATTGATTCAGAGTTGGCTACATCTTTAAGATCAAACTGTCCATTTACCGGAGACGACGATAAGCTTTCGTCTTTAGATGTCAGAACATCATCGTCCTTCGATAACGCTTATTTCAAGAATTTGGAAGAGAATAAAGGGGTTCTTCATTCAGACCAAGCTCTCTTTGGAAATGGCTCAGCTGACTCTCATGTCACATCTTACTCATCTGATTCTTCTGCTTTCTTCTCAGACTTTGCTGCAGCCATGGTTAAGATGTCAAACCTTAGCCCTCTCACCGGAAGTAGCGGTGAAATTCGTTCTGATTGCCGGAAAATCAATTAA 957 44.72 MDSQYIKCLWRLAVFVSLISLSCGSLSANYYEKSCPRLLSTVRREVVKAVGKEYRMGASLLRLHFHDCFVNGCDASVLLDDTSNFTGEKTAIPNKDSLRGFEVIDNIKSLVEAICPSVVSCADILSLAARDSVVALSGPSWVVGLGRKDSTNASFDNANNDLPSPFLDLPDLISAFSNKGFNTKELVALSGSHTIGQARCSMFRVRAHNETNIDSELATSLRSNCPFTGDDDKLSSLDVRTSSSFDNAYFKNLEENKGVLHSDQALFGNGSADSHVTSYSSDSSAFFSDFAAAMVKMSNLSPLTGSSGEIRSDCRKIN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 52974922 52976301 + evm.model.ptg000005l.22 HCH3g1495 542223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1495 318 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
HCH3g1495 318 FunFam Peroxidase 29 167 - -
HCH3g1495 318 CDD secretory_peroxidase 26 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH3g1495 318 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
HCH3g1495 318 Gene3D Peroxidase, domain 2 163 297 - -
HCH3g1495 318 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 Gene3D - 29 318 - -
HCH3g1495 318 FunFam Peroxidase 163 297 - -
HCH3g1495 318 Pfam Peroxidase 42 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 SUPERFAMILY Heme-dependent peroxidases 26 318 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 ProSiteProfiles Plant heme peroxidase family profile. 25 318 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1495 318 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
HCH3g1495 318 PANTHER PEROXIDASE 72-RELATED 14 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1495 HCH-Chr3:52974922 HCH7g0118 HCH-Chr7:769221 1.50E-88 dispersed
HCH3g1495 HCH-Chr3:52974922 HCH3g1496 HCH-Chr3:52981851 2.60E-93 tandem
HCH13g0582 HCH-Chr13:4450166 HCH3g1495 HCH-Chr3:52974922 3.20E-99 wgd
HCH2g0985 HCH-Chr2:53144907 HCH3g1495 HCH-Chr3:52974922 8.80E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1495 K00430 - csv:101221157 485.723