Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1496 ATGGGCATTAGTATTGAGTCATATTGTAGCAAAATGGTAATGATATTGATTGTAATTGGTATGGCAGTGGGAGGCATCTCTTCTTCATCAGCTCAACTCTCTGAAACACATTACAGGAAAAGCTGTCCAAAGCTCATCACCACTGTAAAATCAGTCCTTATATCTCAACTCTCTAAGGAACGCCGCATCGGAGCTTCTCTTCTCCGTCTTCACTTCCATGACTGTTTTGTCAACGGCTGTGATGGATCTGTGCTCTTACACGACACTCCTTCATTTCGAGGAGAACAAACTGCTGCTCCTAATAACAATTCCCTTAGAGGTTTTAATGTCATTCACAAAATTAAGTCTAAGGTTGAGAAACTCTGCCCTGATGTCGTCTCGTGTGCTGATATCTTAACTATTGCTGCTCGTGACTCCGTTGAACTCCTCGGAGGGCCAACATGGGATGTCAAACTAGGACGAAGAGACTCGAAAACAGCAAGCTTTTCTGAAGCCAATAGGACAGGAGTGATTCCTTCACCCTTTTCATCTCTCTCCGATCTTATCACAAGCTTTGGAAATCAAGGCCTTTCTACTAAGGACATGGTTGCTTTATCTGGAGCTCACACAATTGGAGTAGCAAGATGCACAACATTCAGAAGACGAATATATAATGAAAGCAATATTATTGAGAGTGAATTTGCAAAGAAGAGACAAAAGAAATGTCCAAGAACACTGAATTCAGGAGACAACAATCTTGCTCCATTAGACCTCCAAACTCCAACATCTTTTGACAACAAATACTTTCAAAACCTTATTCAGAAAAAGGGTCTCCTCCATTCTGATCAAGTTCTGTTCAATGGTGAATCCACAGATTCTTTGGTTACAAAATACAGTAAAAGTGATAAAGCTTTTGATGAAGACTTTGTTAAAGCAATGATTAAGATGGCTGATATTAAACCCCTCACTGGCTCCAATGGTGAGATTAGAAAAAAGTGTGGGAACCCCAATAAGGATAATTAA 1002 40.12 MGISIESYCSKMVMILIVIGMAVGGISSSSAQLSETHYRKSCPKLITTVKSVLISQLSKERRIGASLLRLHFHDCFVNGCDGSVLLHDTPSFRGEQTAAPNNNSLRGFNVIHKIKSKVEKLCPDVVSCADILTIAARDSVELLGGPTWDVKLGRRDSKTASFSEANRTGVIPSPFSSLSDLITSFGNQGLSTKDMVALSGAHTIGVARCTTFRRRIYNESNIIESEFAKKRQKKCPRTLNSGDNNLAPLDLQTPTSFDNKYFQNLIQKKGLLHSDQVLFNGESTDSLVTKYSKSDKAFDEDFVKAMIKMADIKPLTGSNGEIRKKCGNPNKDN 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 52981851 52983134 + evm.model.ptg000005l.21 HCH3g1496 542224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1496 333 FunFam Peroxidase 36 177 - -
HCH3g1496 333 CDD secretory_peroxidase 32 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH3g1496 333 ProSiteProfiles Plant heme peroxidase family profile. 32 330 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 194 204 IPR019793 -
HCH3g1496 333 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601(InterPro)
HCH3g1496 333 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Plant peroxidase signature 193 205 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 FunFam Peroxidase 172 309 - -
HCH3g1496 333 Gene3D - 37 326 - -
HCH3g1496 333 SUPERFAMILY Heme-dependent peroxidases 32 329 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 Gene3D Peroxidase, domain 2 172 309 - -
HCH3g1496 333 Pfam Peroxidase 49 293 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PANTHER PEROXIDASE 72-RELATED 13 327 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH3g1496 333 PRINTS Haem peroxidase superfamily signature 194 209 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0985 HCH-Chr2:53144907 HCH3g1496 HCH-Chr3:52981851 9.90E-123 dispersed
HCH2g0986 HCH-Chr2:53153067 HCH3g1496 HCH-Chr3:52981851 2.40E-115 dispersed
HCH3g1496 HCH-Chr3:52981851 HCH7g0118 HCH-Chr7:769221 4.50E-88 dispersed
HCH3g1495 HCH-Chr3:52974922 HCH3g1496 HCH-Chr3:52981851 2.60E-93 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1496 K00430 - mdm:103447309 436.032