Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1507 ATGGGTTCTAAGCGTTGCATGAATACTTGTTGTGCTGGTAGAAGTAGGAGTAGTAATCATGATGAGTTCCGCAAAGGATGGCCTCTGGGATCCGCTGGATTTGCGCATCTCTGCCTCAAATGCGGTTCTGCTTACGAAAACGCTGTCTTCTGCGATACATTCCACTTACACCAGACTGGTTGGAGAGATTGTAGTTTTTGTGCCAAGCCTATCCACTGTGGCTGTATAGCTTCAAGGTCTTTGTTTCAATATCTGGATTATGGGGGTATTGGGTGCATCACCTGTGCCAAAACATCCCCACATGATGTGATCCGGAGAGATGAAATTTCTAATGGATTTGATGCAGTGACAGTTGGAAATGTTGGCCTTCTGCAATCTTCTTCGGTTGAGGATCGACTGGTTGGAAATGGTATTGCTGAGGAAAAGCTTTTACAGCTGTGTAACATCATGGAGGAAAATGAAACAAACCGTTTTCAGCAATCTCAAAGAGTCGACACTGGTGCATTTGCTGGACAGAACAGAGGAGAGAATCTCAGGAGTCCATTTGGGGAAGTTGGAACAACCTTTTTTAATGTGACTAAACCACCGGTCCAATGCCAACCATCAGCTGGTTCACTAACGTATACCAAACTAGATACTAGTAGACCATTCTTAGAGTTAAAAGATATGCATGAATCTCTTAGTCAGCCATCATTAAGTATAACTTTGGGAGTTCCATTAGGTACACCAAAGTTTGTGGTACCCTTTTCACGGAGTTCTGTTGAAGAGGATGAACAGAGCATTCTACCTCCATTTCAACAGGGCCAAAGATCTCATCCCATATTTCCCAAGCCCTTAAAAACTGCAGTTGCTGTTAGTTCAGAAGCAAGAAAAGGAATGGCTCCTCCCATGCGTATTGCTAGGCCACCTGCTGAAGGTCGGGGTAAGAACCAATTACTTCCCCGATACTGGCCAAGGATTACTGACCAAGAGCTTGAGCAATTATCTGGAGATTTGAATTCTACTATTGTTCCATTGTTTGAGAAGGTATTGAGTGCCAGTGATGCTGGTCGAATTGGCCGTTTGGTTCTCCCAAAAGCATGTGCTGAAGCATATTTTCCCCACATTTCTCAATCAGAAGGCCTTCCTGTAAGGATTCAAGACGTGAAGGGAAATGAATGGACGTTTCAATTCAGATTTTGGCCGAACAATAACAGCAGAATGTATGTTTTGGAGGGAGTCACCCCATGCATACAGTCAATGCAATTACAAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGCAAATTGGTCATGGGATTTCGAAAAGCAACAAATTCCACTAATGGCTCTCATGCGGGTGAACCCTCATATTCTGGAGTTTTTCAGAATTTGCCTATGCGAGCTGATGGAGATATTAGTTTGCATAAAAGTGAAAATTTTGGGGGAAGGACAAATGAGGCTTCAGGACAACAACCGATGTTAATTTTGGAGACGAAAAGGGCTCGAAACATAGGGTCTAAAAATAAGAGGTTGCTCATGCACAGTGAAGATGCTTTGGAGTTGAGACTTACATGGGAAGAAGCTCAGGATTTACTCCGCCCTCCACCAAGTGCAAGCCCCACCATCGTTACTATTGATGACCATGAATTTGAAGAGTATGATGAACCTCCAGTTTTTGGAAAGAGAACCTTATTCACTATCCGACCATCCGGGGAACAGAAACAATGGGCACAGTGTGATGATTGCTCAAAATGGCGGAGATTGCCTGTGGATGTTCTTCTCCCCCCAAAGTGGACTTGTTCAGAGAATGTTTGGGATTTGAGCAGGTGTACATGTTCAGCACCAGAAGAGCTCAGTCCAAAGGAACAAGATAATCTTTTTAGAGCGAGTAAAGATTTTAAGAAGCGCAGAATTATGGAGAGCCAGAAGCCTTCTCAAGAGCTTGAGCTTGAGCCTTCTGGTTTGGATGCACTGGCCAGTGCTGCAGTTCTGGGTGATAGTGTGGGTGACTTGCATGAATCATTAGTTGGTGTGACCACTAGACATCCTAGACACCGACCAGGATGCACTTGCATTGTGTGTATTCAGCCTCCAAGTGGGAAGGGAAAGCACAAGTCCACATGTACATGCAATGTCTGCTTGACTGTAAAGCGTCGATTTAAAACGCTCATGTTGCGGAAAAAAAAACGCCAATCAGAACGTGAAGCAGAGAATCTGCTCAAGGATGGCAGTTCCCAATTGGAAGAATCAGAAACAAATGGGCCAGTGAGAGAAACATCGTTGCAAACAAATCATTCAGAGAGCGAAGGAAGTCAGGGCAGGATGAAAGATGAGGTGGCTGCAAATAGCAGTGGGCAAATTGACTTGAATTGCCACCCTGACCGTGAGGATATGCAGCTGGAGGTAGCAGGATTAAGCATGATTGGCCGTGTTGAGGCTGCCACCCAACCTTCAGACAGCTACACAAAGCAAATTGGAGTCAATAACGCCATAAGTGAGCAGCATTCCAGTCAACCAAATAGTGGAGAGAGTGAGAGACGCCTTTCTGATGAAGGGTGTCTTGGATCTCGAGATTGTGATCATGAGAGCACTAGCGGAGAGCCCCATTAA 2601 44.79 MGSKRCMNTCCAGRSRSSNHDEFRKGWPLGSAGFAHLCLKCGSAYENAVFCDTFHLHQTGWRDCSFCAKPIHCGCIASRSLFQYLDYGGIGCITCAKTSPHDVIRRDEISNGFDAVTVGNVGLLQSSSVEDRLVGNGIAEEKLLQLCNIMEENETNRFQQSQRVDTGAFAGQNRGENLRSPFGEVGTTFFNVTKPPVQCQPSAGSLTYTKLDTSRPFLELKDMHESLSQPSLSITLGVPLGTPKFVVPFSRSSVEEDEQSILPPFQQGQRSHPIFPKPLKTAVAVSSEARKGMAPPMRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPGGKLVMGFRKATNSTNGSHAGEPSYSGVFQNLPMRADGDISLHKSENFGGRTNEASGQQPMLILETKRARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSASPTIVTIDDHEFEEYDEPPVFGKRTLFTIRPSGEQKQWAQCDDCSKWRRLPVDVLLPPKWTCSENVWDLSRCTCSAPEELSPKEQDNLFRASKDFKKRRIMESQKPSQELELEPSGLDALASAAVLGDSVGDLHESLVGVTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREAENLLKDGSSQLEESETNGPVRETSLQTNHSESEGSQGRMKDEVAANSSGQIDLNCHPDREDMQLEVAGLSMIGRVEAATQPSDSYTKQIGVNNAISEQHSSQPNSGESERRLSDEGCLGSRDCDHESTSGEPH 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 53039139 53045108 - evm.model.ptg000005l.10 HCH3g1507 542235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1507 866 MobiDBLite consensus disorder prediction 826 866 - -
HCH3g1507 866 ProSiteProfiles B3 DNA-binding domain profile. 340 441 IPR003340 GO:0003677(InterPro)
HCH3g1507 866 Pfam CW-type Zinc Finger 572 614 IPR011124 GO:0008270(InterPro)
HCH3g1507 866 MobiDBLite consensus disorder prediction 841 866 - -
HCH3g1507 866 Coils Coil 730 750 - -
HCH3g1507 866 ProSiteProfiles Zinc finger CW-type profile. 567 617 IPR011124 GO:0008270(InterPro)
HCH3g1507 866 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 1 842 - -
HCH3g1507 866 FunFam B3 domain-containing transcription repressor VAL1 318 445 - -
HCH3g1507 866 MobiDBLite consensus disorder prediction 826 840 - -
HCH3g1507 866 SMART B3_2 340 440 IPR003340 GO:0003677(InterPro)
HCH3g1507 866 CDD B3_DNA 338 439 IPR003340 GO:0003677(InterPro)
HCH3g1507 866 SUPERFAMILY DNA-binding pseudobarrel domain 337 440 IPR015300 -
HCH3g1507 866 Gene3D - 564 616 - -
HCH3g1507 866 Gene3D - 318 445 IPR015300 -
HCH3g1507 866 MobiDBLite consensus disorder prediction 742 766 - -
HCH3g1507 866 MobiDBLite consensus disorder prediction 725 741 - -
HCH3g1507 866 MobiDBLite consensus disorder prediction 723 789 - -
HCH3g1507 866 Pfam B3 DNA binding domain 340 439 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0024 HCH-Chr11:694656 HCH3g1507 HCH-Chr3:53039139 6.60E-227 dispersed
HCH14g0875 HCH-Chr14:36506264 HCH3g1507 HCH-Chr3:53039139 1.00E-155 dispersed
HCH3g1507 HCH-Chr3:53039139 HCH5g0977 HCH-Chr5:9080309 4.50E-15 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33391 PF02362 B3 1.10E-16 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1507 K09287 - csv:101214226 1253.81