Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH3g1508 | ATGGAAATGGATCTGGTTGTGTTGGAGAAGGGTCTTTTGGGTGTTTTCTTGTCCATGATTATTGCCATTTTCATATCTAAACTTGCAGGGAAGCGTTTTAAACTCCCACCAGGTCCCATCCCAATTCCCATCTTTGGTAATTGGCTTCAAGTGGGTGATGATTTGAACCACCGCAACCTCATCCATCTCGCTAACAAATTCGGAGATATATTTTTACTTAGAATGGGGCAACGTAACTTGGTGGTTATTTCTTCTCCAGAGCTTGCTAAGGAAGTACTCCACACTCAAGGAGTTGAGTTTGGTTCCAGAACTAGAAACCTGGTCTTCGATATATTCACTAATAAGGGTCAGGATATGGTGTTTACTGTTTATGGTGAGCACTGGAGGAAGATGAGACGAATCATGACCCTTCCTTTTTTCACGAACAAAGTTGTCCAGCAAAATAGGTTTTCTTGGGAGGAGGAGGCTGAGAGAGTTGTTGAGGATTTGAAGAATGATGAAGAGGCATCCACGTGTGGGATTGTTTTGAGGAGACGTTTGCAACTTCTGATGTACAATAATATGTACAGGATGATGTTTGATAGGAGATTTGATTCCATGGAAGATCCTTTGTTTAATCAACTCAAGCTTCTAAATGCAGAGAGGAGTAGACTGTCTCAGAGCTTTGAATACAATTATGGTGATTTCATTCCCATACTGAGGCCTTTTCTCAGAGGCTATTTGAATGTTTGTAAGGATATCAAGGACAGGAGGCTCAAGCTCTTCAAGGACTATTTCGTTGATGAGAGGAGGAAACTGATAATTAGCTGCAGGAAGAGGAAGGAGGAAGAGGGTTTGAAATGTGCCATTGATCATATTGTGGAGGCTCAAGAGAAGGGTGAGATTAATGAAGACAATGTTCTCTTCATTGTTGAGAATATCAACGTTGCTGCAATTGAGACAACATTATGGTCGATGGAGTGGGCAATTGCTGAGCTAGTGAACCATCCAATGATCCAGAAAAAGGTAAGGGACGAGGTAGACACCGTGCTTGGACATGGAGTTCAAATCACAGAGCCTGACATCCACAAACTTCCTTACCTTCAAGCTGTAATCAAAGAAGCACTGAGGCTAAGGATGGCAATTCCCCTGCTAGTGCCACACATGAATCTTCAAGATGCCAAACTGGGTGGTTATGATATTCCAGGAGAGAGCAAGATTTTGGTGAATGGGTGGTGGTTGGCTAATAATCCTGATCACTGGAAGAATCCAAAAGAATTCAGACCAGAGAGATTCTTGGAAGAGGAAGATGGTGTTGAGGCAAATGGAAATGACTTCAGATACATACCCTTCGGTGTGGGAAGGAGGAGTTGCCCTGGAATTATTCTGGCTTTGCCCATCATTGCTATTACATTGGGTCGTTTGGTACAGAATTTTGAGCTGCTGCCTCCTCCTGGACAATCGAAGATTGATACCACTGAAAAACCAGGGCAGTTTAGCCTGCAAATATTCAAGCATTCCACCATTGTTGCAAAGCCTAGGTCTTTCTAA | 1530 | 42.75 | MEMDLVVLEKGLLGVFLSMIIAIFISKLAGKRFKLPPGPIPIPIFGNWLQVGDDLNHRNLIHLANKFGDIFLLRMGQRNLVVISSPELAKEVLHTQGVEFGSRTRNLVFDIFTNKGQDMVFTVYGEHWRKMRRIMTLPFFTNKVVQQNRFSWEEEAERVVEDLKNDEEASTCGIVLRRRLQLLMYNNMYRMMFDRRFDSMEDPLFNQLKLLNAERSRLSQSFEYNYGDFIPILRPFLRGYLNVCKDIKDRRLKLFKDYFVDERRKLIISCRKRKEEEGLKCAIDHIVEAQEKGEINEDNVLFIVENINVAAIETTLWSMEWAIAELVNHPMIQKKVRDEVDTVLGHGVQITEPDIHKLPYLQAVIKEALRLRMAIPLLVPHMNLQDAKLGGYDIPGESKILVNGWWLANNPDHWKNPKEFRPERFLEEEDGVEANGNDFRYIPFGVGRRSCPGIILALPIIAITLGRLVQNFELLPPPGQSKIDTTEKPGQFSLQIFKHSTIVAKPRSF | 509 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 53046371 | 53048062 | - | evm.model.ptg000005l.9 | HCH3g1508 | 542236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH3g1508 | 509 | CDD | CYP73 | 66 | 500 | - | - | |
| HCH3g1508 | 509 | FunFam | Trans-cinnamate 4-monooxygenase | 25 | 501 | - | - | |
| HCH3g1508 | 509 | Gene3D | Cytochrome P450 | 24 | 500 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | Pfam | Cytochrome P450 | 36 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 444 | 453 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH3g1508 | 509 | PRINTS | P450 superfamily signature | 363 | 374 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | PRINTS | P450 superfamily signature | 442 | 451 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | PRINTS | P450 superfamily signature | 310 | 327 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 3 | 508 | - | GO:0004497(PANTHER)|GO:0009808(PANTHER)|GO:0016710(PANTHER) | |
| HCH3g1508 | 509 | SUPERFAMILY | Cytochrome P450 | 36 | 507 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | PRINTS | E-class P450 group I signature | 183 | 201 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | PRINTS | E-class P450 group I signature | 299 | 316 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | PRINTS | E-class P450 group I signature | 362 | 380 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | PRINTS | E-class P450 group I signature | 319 | 345 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | PRINTS | E-class P450 group I signature | 403 | 427 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | PRINTS | E-class P450 group I signature | 88 | 109 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | PRINTS | E-class P450 group I signature | 441 | 451 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | PRINTS | E-class P450 group I signature | 451 | 474 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1508 | 509 | PRINTS | E-class P450 group I signature | 64 | 83 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH3g1508 | HCH-Chr3:53046371 | HCH9g1264 | HCH-Chr9:36129205 | 2.00E-71 | dispersed | |
| HCH2g0975 | HCH-Chr2:53060292 | HCH3g1508 | HCH-Chr3:53046371 | 5.50E-247 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH3g1508 | K00487 | - | csv:101208511 | 865.914 |