Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1512 ATGTATCGATCACTGGAGTATGGAGGAGGCCTTCTCCTCCTATGCTTCTCTTCCTCCCTCCTGGTCCTAGCTCAACCTCCCGTACCCGTTACCCATCCTTCCGAAGTCGATGCTTTACTTTCCATCAAGCGAAGTTTGAACGATCCCTTTGGGAATCTCACCAACTGGGCCACAGGAGACCCTTGTACTTCTAACTGGACCGGCGTTCTCTGCTACAATACTACTTTCCAAGATAACTTTCTACATGTTCTTGAACTCCAACTGTTAAGCAAGAATCTATCTGGAAATTTATCTCCCGCCCTTGGCCGTTTATCTCATCTCAAAGTTTTAGACTTTATGTGGAATAAGATAACTGGGAGCATACCAGCAGAGATAGGCAACCTTACGTCCTTGGAACTATTGCTTCTGAACGGGAACCAGTTGTCAGGTCCATTGCCTGAAGAGCTTGGAAATCTTATACATTTAGACAGAATACAGATTGACCAGAACCATATATCTGGACCTATACCTAAAACATTTGCGAACTTAAAAGCAACAAAACATTTCCACATGAATAACAATTCTATTAATGGGGAAATCCCATCTGAGCTATCCGGATTGCCAAATCTTGTCCACTTCCTTCTTGACAATAACAACCTATCGGGGAATCTTCCGCCAGAGTTGTTTAAATTGCCAAGCTTAGAAATACTTCAACTTGATAACAACAACTTTAGCGGGTCCGGAATACCAGATTCTTATGGAAATATGACTAAATTGTTGAAATTGAGTCTAAGGAACTGTAACTTGCAAGGACCAATTCCTAATCTGAGCAGGATATCAAGTCTTGGTTATCTAGATCTAAGTTCCAATCAGCTAAGTGGATCCATACCACCAGATAAACTTTCTGAGAATATAACAACCATCTTGTTATCCAACAACCGTCTTACTGGAATTATACCATCCAGTCTTTCGGGTCTACCACGTCTTCAAAAGCTGTCAATTGCAAATAATTCATTGAATGGCTCTGTTTCTTCCACCATTTGGCAAAGCAGGACTTCTAATTCTTTGGACCGGCTTATCATAGAGCTACAAAACAACAATCTTTCCAATATTTTGGGAAGCATTGATATCCCTCTGAATGTTACTGTCTGGCTTCAGGGAAATCCTGCTTGTTCAAATGACAGTCTTGCACGTTTTTGTGAATCTGAAAAAATTGAATTAATTGAAAATCCAGCCACTAACACTGTTGGATGTTCTGGTCCCATATGCCCACCTTCTTATGAATGTTACTCAGCAAAATGTCCCTCATCTTGTTTCTGTGCTGCACCTCTTCTTATTGGATATCGGTTGAAAAGTCCTGGATTTTCATATTTTAGTCCGTATCGACATATGTTTGAGGAATATCTGACTAATGGTGTTAAGTTACATCTTGAACAACTGGATATTGGTTCTCCTGTTTGGGAAAAAGGACCTCGATTGAGAATGAACCTGAAGCTTTTCCCCCTATTTGTTGCTGATAGTAACAGTTCCCGTCAATTTAACGACAGTGAGGTTCGGCGAATCATTTCCAAGTTCACAAATTGGAAAATTCCGGATAACGATATATTTGGACCATATGAACTTATGAGCTTGACATTATCAGAGGTTTATAAGAATGTATTTCCTACGCCATCGTCTAAGAACATTAGCAAAGGGGCATTGGCTGGAATAATATTAGGAGCAATTGCAGGTGGAGCTACATTATGTGCAATCATTTCTCTTTTTATAATAAGATCACGTATGACTGGCCGATATTCAGTCTCTAGAAGGCGTCTTTTGTCAAAGTCCTACTTAAAAATCGAGGGCATAAAGGATTTTAGTTATGATGAAATGGCCCTAGCTACAACCAATTTTCATGGCTCTGCCGTAGTTGGTCAAGGAGGTTACGGAAAGGTTTACAAGGGAATTCTTGCTGATAGCACAGTTGTGGCTGTCAAACGTGCGCAGGAGGGCTCATTACAGGGTGAGAAGGAGTTCTTAACTGAAATACATTTGTTGTCAAGGTTACACCACCGCAATCTTGTAGCTTTGATTGGATACTGTGATGAAGAAGGGGAACAGATGTTGGTTTATGAGTTTATGTCAAACGGCACTCTGAGGGATCATCTTTCTGCAAATTCTGTGGAACCTTTAAGTTTTGCCAGAAGACTAAAAGCTGCCGTGGGTGCAGCCAAGGGTATTCTATACCTACATACAGAAGCTGATCCCCCAATATTTCACCGAGATATCAAGTCCAGCAACATATTATTAGATTCTAAATATATGGCAAAGGTAGCTGATTTTGGACTTTCACGGCTTGCCCCTCTACCAGATATAGAAGGGGCTGTGCCTGCTCATGTATCAACAGTAGTAAAAGGAACACCAGGTTATCTTGATCCAGAATACTTTTTGACTCATAAACTGACGGATAAGAGTGATGTTTATAGTCTTGGTGTTGTGTTTTTGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGAAAGAACATTGTTAGAGAGGTTAAAGTTGCATATCAGTCCGGAAAGATTTTCTCCATAATTGATGGGCGACTGGGATCTTATCCTGCTGAATGTGTGGAAAAGTTTGTGACATTGGCTCTAAAGTGTTGCCAAGATGATACAGATGCACGCCCCTCAATGTCAGAGATTGTTCGAGAACTTGAAAGCATATGGCTTATGTTGCCCGAGTCTGATACAAAATCTGCGGATTCTATGATCACTGATGTTATAAAAGTGACTAGTCCTCCATCTTCATCCAACATGAACAACTTTTACATGTCATCAGAAGTTTCTGGTAGCGACCTTGTTAGTGGCGTAATTCCCACCATCACACCTAGATAG 2859 40.89 MYRSLEYGGGLLLLCFSSSLLVLAQPPVPVTHPSEVDALLSIKRSLNDPFGNLTNWATGDPCTSNWTGVLCYNTTFQDNFLHVLELQLLSKNLSGNLSPALGRLSHLKVLDFMWNKITGSIPAEIGNLTSLELLLLNGNQLSGPLPEELGNLIHLDRIQIDQNHISGPIPKTFANLKATKHFHMNNNSINGEIPSELSGLPNLVHFLLDNNNLSGNLPPELFKLPSLEILQLDNNNFSGSGIPDSYGNMTKLLKLSLRNCNLQGPIPNLSRISSLGYLDLSSNQLSGSIPPDKLSENITTILLSNNRLTGIIPSSLSGLPRLQKLSIANNSLNGSVSSTIWQSRTSNSLDRLIIELQNNNLSNILGSIDIPLNVTVWLQGNPACSNDSLARFCESEKIELIENPATNTVGCSGPICPPSYECYSAKCPSSCFCAAPLLIGYRLKSPGFSYFSPYRHMFEEYLTNGVKLHLEQLDIGSPVWEKGPRLRMNLKLFPLFVADSNSSRQFNDSEVRRIISKFTNWKIPDNDIFGPYELMSLTLSEVYKNVFPTPSSKNISKGALAGIILGAIAGGATLCAIISLFIIRSRMTGRYSVSRRRLLSKSYLKIEGIKDFSYDEMALATTNFHGSAVVGQGGYGKVYKGILADSTVVAVKRAQEGSLQGEKEFLTEIHLLSRLHHRNLVALIGYCDEEGEQMLVYEFMSNGTLRDHLSANSVEPLSFARRLKAAVGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYMAKVADFGLSRLAPLPDIEGAVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRHPISHGKNIVREVKVAYQSGKIFSIIDGRLGSYPAECVEKFVTLALKCCQDDTDARPSMSEIVRELESIWLMLPESDTKSADSMITDVIKVTSPPSSSNMNNFYMSSEVSGSDLVSGVIPTITPR 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 53092133 53128200 + evm.model.ptg000005l.5 HCH3g1512 542240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1512 952 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 194 - -
HCH3g1512 952 Pfam Protein kinase domain 627 891 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1512 952 Gene3D Transferase(Phosphotransferase) domain 1 700 914 - -
HCH3g1512 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g1512 952 SMART serkin_6 624 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1512 952 Gene3D Phosphorylase Kinase; domain 1 597 699 - -
HCH3g1512 952 Gene3D Ribonuclease Inhibitor 292 427 IPR032675 -
HCH3g1512 952 ProSitePatterns Protein kinases ATP-binding region signature. 630 652 IPR017441 GO:0005524(InterPro)
HCH3g1512 952 CDD STKc_IRAK 630 896 - -
HCH3g1512 952 Gene3D Ribonuclease Inhibitor 30 291 IPR032675 -
HCH3g1512 952 ProSiteProfiles Protein kinase domain profile. 624 898 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1512 952 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
HCH3g1512 952 SUPERFAMILY L domain-like 46 414 - -
HCH3g1512 952 FunFam Leucine-rich repeat protein kinase family protein 590 699 - -
HCH3g1512 952 Pfam Leucine Rich Repeat 297 319 IPR001611 GO:0005515(InterPro)
HCH3g1512 952 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515(InterPro)
HCH3g1512 952 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515(InterPro)
HCH3g1512 952 Pfam Leucine Rich Repeat 275 291 IPR001611 GO:0005515(InterPro)
HCH3g1512 952 PANTHER RECEPTOR-LIKE PROTEIN 55 56 894 - -
HCH3g1512 952 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515(InterPro)
HCH3g1512 952 SUPERFAMILY Protein kinase-like (PK-like) 609 931 IPR011009 -
HCH3g1512 952 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 700 910 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1512 HCH-Chr3:53092133 HCH9g0850 HCH-Chr9:6038184 2.30E-206 dispersed
HCH12g1517 HCH-Chr12:41395376 HCH3g1512 HCH-Chr3:53092133 4.20E-60 transposed
HCH13g0628 HCH-Chr13:4892828 HCH3g1512 HCH-Chr3:53092133 1.60E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81431 PF00069 Pkinase 1.40E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1512 - - - 0.0