Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0001 ATGCCTTTTAGTTTGGTTTCTGCATGGAAAAAGCGCCGGAGATACAAGTCACAAGATCATACTGACCCATGGATCTACAAACCAGTGGAGTTTTGGCAGCTCGAAGATCAAACCCCCCCAGAAACCACCAAAAGACACCATGTTTCGTATGTTTTTACACTCAAGGAAATGGAAGAGGCAACATGTTCATTTAGTGATGACAACATGCTTGGAAAAGGAGGCTTTGGCCGAGTTTACAAGGGTACTTTGCCGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGCTCCCACCATTTAAAGAAGCTGAGGGAGAGCGTGAATTTCGTGTGGAAGTTGATATATTGAGCAGACTCGATCATCCAAATCTTGTTTCCTTGATAGGCTATTGTGCCGATGGAAAACATCGCTTTCTAGTGTATGAATATATGCACAAAGGGAATCTACAGGATCACTTAAATGGAATTAGAGAAACAAAGATGGATTGGCCATCAAGGCTGAGAGTAGCATTTGGAGCAGCAAAGGGTCTTGCATATCTCCATTCAAGTTCAGCTGTTGGCATGCCTATAGTTCACAGAGATTTCAAATCCACAAACATTCTTCTTGATTCCAACTTAGATGCAAAGATATCAGACTTCGGGCTTGCAAAATTTATGCCAGAGGGACAGGAATCACATGTGACAGCGAGAGTACTCGGCACGTTTGGATACTTTGATCCTGAGTATACATCGACAGGGAAACTCACTTTGCAAAGTGATGTTTATGCATTTGGAGTGGTTCTTCTTGAGCTCCTGACAGGCCGTCAAGCTGTGGACTTGAACCAGGGGCCAAATGATCAAAACCTGGTCCTGCAGGTAAGGAATATATTAAATGATCGAAAAAAGTTGCGAAAGATTATAGATCCAGAAATGACTCGAAGTTCATATACAATGGAATCTATAGCCATATTTGGCAACCTGGCTTCACGCTGTGTCCGAACAGAGAGTAGTGAAAGACCGTCAATGGAAGAATGTGTAAGAGAAATACAAGGGATCATCTATACAAATTCGAAAGGCATGGGGATCACACAGTCATAA 1074 42.46 MPFSLVSAWKKRRRYKSQDHTDPWIYKPVEFWQLEDQTPPETTKRHHVSYVFTLKEMEEATCSFSDDNMLGKGGFGRVYKGTLPSGEVVAIKKMELPPFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHKGNLQDHLNGIRETKMDWPSRLRVAFGAAKGLAYLHSSSAVGMPIVHRDFKSTNILLDSNLDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRQAVDLNQGPNDQNLVLQVRNILNDRKKLRKIIDPEMTRSSYTMESIAIFGNLASRCVRTESSERPSMEECVREIQGIIYTNSKGMGITQS 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34203 36218 - evm.model.ptg000015l.1 HCH4g0001 542245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0001 357 CDD STKc_IRAK 70 344 - -
HCH4g0001 357 FunFam receptor-like serine/threonine-protein kinase NCRK 143 353 - -
HCH4g0001 357 PIRSF ILK 35 352 - -
HCH4g0001 357 Pfam Protein kinase domain 66 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0001 357 PANTHER OS01G0750732 PROTEIN 35 346 IPR050885 -
HCH4g0001 357 Gene3D Transferase(Phosphotransferase) domain 1 143 353 - -
HCH4g0001 357 SUPERFAMILY Protein kinase-like (PK-like) 36 339 IPR011009 -
HCH4g0001 357 FunFam serine/threonine-protein kinase PBS1-like 32 142 - -
HCH4g0001 357 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524(InterPro)
HCH4g0001 357 Gene3D Phosphorylase Kinase; domain 1 30 142 - -
HCH4g0001 357 ProSiteProfiles Protein kinase domain profile. 64 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0001 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0001 HCH-Chr4:34203 HCH7g0117 HCH-Chr7:761567 4.40E-73 dispersed
HCH4g0001 HCH-Chr4:34203 HCH7g1120 HCH-Chr7:43960087 2.50E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81432 PF00069 Pkinase 5.90E-50 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0001 - - - 0.0