Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0006 ATGGATCTGGAAACTGGGGTTCATCCACAAACAAAATATGCTAAGACTCAAAGCCATATAGATTCATGGAAGACTGTCCTCACTCTTTCTTATCAAAGTCTTGGCGTTGTCTATGGTGATTTAAGCACTTCACCTCTCTACGTTTATAGGAATACTTTTGCTGATGAAGATATTGAGCATTCTAACTCCAACGAAGAGATTTTTGGTGTTTTATCTTTCATTTTCTGGACCCTTACTATTATCCCTTTGCTCAAATATGTTTTTATTGTTCTTAATGCCAACGATAATGGCGAGGGGGGCACTTTTGCTCTCTACTCATTGTTGTGTCGACACGCCCGAGTTAGCTCCCTTCCTAATCTTCAACCTGCAGATCAGGAGCTTCTTCACTACAACTTTACTTCACCACCCAATTTAACCTCCTTTGCATCCAAGCTCAAATCCACCTTAGAAACCCATAAGCTCTTCCACACTTTTTTACTCATTCTCGCCTTGATTGGGACTTGTATGGTTATTGGAGATGGCATCCTAACTCCAGCTATTTCTGTTTTTTCCGCTGTTTCTGGACTCGAGCTTACCATGTCAAAAGAACATCACAAGTATATAGAAGTTCCAGCTGCATGCATCATACTGATAGCTTTGTTTGCCCTTCAGCATTTTGGAACTCACAGGGTTGGATTCTTGTTTGCTCCTATAGTTACAACATGGCTTTTGTGCATTAGTGCTATTGGTTTATACAATGTCATTCACTGGAATCCTCATGTATATCGAGCACTTTCACCTCATTATATGTTCCTATTCTTGAAGAAAACACAAAGAGGAGGCTGGATGTCACTAGGAGGAATTTTACTTTGTATAACTGGTTCTGAGGCTATGTTTGCTGATCTTGGACATTTTTCACAATTGTCAATCCAGATTGCATTCACTTTCTTGGTTTATCCATCTCTGGTTTTAGCTTATATGGGACAGGCTGCCTATCTATCTCAACATCATTCCATCCCAAATGATTATCGAATCGGATTCTATATATCTGTCCCAGAGAAGTTAAGATGGCCTGTTCTGGTAATTGCCATACTTGCTGCTGTAGTAGGAAGCCAGGCCATCATCACTGGAACTTTTTCAATCATTAAACAGTGCTCTGCTTTGAATTGCTTCCCCAGAGTCAAAATAGTTCATACATCATCTAAAATCCACGGTCAAGTTTATATCCCCGAGATTAACTGGATCTTGATGCTGTTATGCTTGGCTGTTACAATTGGTTTCAGAGACACAAAGCGCTTGGGTAATGCATCAGGTCTGGCAGTAATCACAGTGATGTTGGTCACTACCTGCTTGATGTCTTTAGTCATTGTCCTTTGCTGGCACCGGAGCGTTGTTCTTGCAATATGCTTTGTAGTCTTCTTTGGCTCAATTGAAGCCATGTATTTCTCAGCTTCTCTCATCAAGTTTCTAGAAGGTGCATGGGTTCCCATTGCTCTTGCAATGGTATTCATGATTGTCATGTATGTCTGGCACTATGGCACGCAGAAGAAGTATGAGTTTGATTTCCAAAACAAGGTCACAATTAATTGGTTGCTTAGTGTGGGTTCCAGCCTCGGCATTGTACGAGTCCGTGGGATTGGCATTGTGCACACTGAACTTGTATCGGGAATCCCAGCAATATTTTCCCATTTTGTCACCAATCTTCCTGCCTTTCACCAGGTGCTTGTTTTTCTGTGCATCAAATCTGTGCCAGTTCCACATGTTAAACCTGAAGAGAGGTTTCTGGTTGGGCGAATTGGACCCAGTGAGTTTAGGCTGTATAGGTGCATTGTGCGGTATGGATATAGAGATGTGCACAAGGACGATGTAGAGTTTGAAAAGGACCTTGTATGTAGTATAGGTGAGTTTATAAGATCCGGGACTGGGGGTGGTTGTAATGCTGCAGATTTTGGGAAGGAAAGTGACAAAATGACAGTAGTGGGAACGTGTAGTACACATATGGATGGAATTCAGGTGAAAGAAGATGATGAAGGCAGTGGCACATCGAAATCGAAGGAGAGTGAAATCAGGTCTCCTTCTCCACCGGTTGCCCAAGCAAGGAAAAGGGTGAGATTTATTGTGCCCGAGAGCCCGAAAATTGAGGTGGTGGCAATGGAGGAACTGGGGGAGCTGATGGAAGCGAGGGAAGCAGGGATTGCTTACATATTGGGTCACACGCACACGAAAGCAAAGCAAGGATCAAACATGCTAAGAAAACTTGTAATTAACTATGGGTATGAATTCTTGAGGAGGAATAGCAGGGGACCAAGCTACCCCCTTGATTTACCGCATGCGTCTACTCTTGAGATGACAGTGCCCCACTGA 2343 42.64 MDLETGVHPQTKYAKTQSHIDSWKTVLTLSYQSLGVVYGDLSTSPLYVYRNTFADEDIEHSNSNEEIFGVLSFIFWTLTIIPLLKYVFIVLNANDNGEGGTFALYSLLCRHARVSSLPNLQPADQELLHYNFTSPPNLTSFASKLKSTLETHKLFHTFLLILALIGTCMVIGDGILTPAISVFSAVSGLELTMSKEHHKYIEVPAACIILIALFALQHFGTHRVGFLFAPIVTTWLLCISAIGLYNVIHWNPHVYRALSPHYMFLFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIQIAFTFLVYPSLVLAYMGQAAYLSQHHSIPNDYRIGFYISVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALNCFPRVKIVHTSSKIHGQVYIPEINWILMLLCLAVTIGFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWHRSVVLAICFVVFFGSIEAMYFSASLIKFLEGAWVPIALAMVFMIVMYVWHYGTQKKYEFDFQNKVTINWLLSVGSSLGIVRVRGIGIVHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVKPEERFLVGRIGPSEFRLYRCIVRYGYRDVHKDDVEFEKDLVCSIGEFIRSGTGGGCNAADFGKESDKMTVVGTCSTHMDGIQVKEDDEGSGTSKSKESEIRSPSPPVAQARKRVRFIVPESPKIEVVAMEELGELMEAREAGIAYILGHTHTKAKQGSNMLRKLVINYGYEFLRRNSRGPSYPLDLPHASTLEMTVPH 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 63819 68498 - evm.model.ptg000015l.6 HCH4g0006 542250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0006 780 MobiDBLite consensus disorder prediction 663 677 - -
HCH4g0006 780 NCBIfam potassium uptake protein 29 776 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH4g0006 780 Pfam K+ potassium transporter C-terminal domain 538 776 IPR053952 -
HCH4g0006 780 MobiDBLite consensus disorder prediction 663 689 - -
HCH4g0006 780 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 15 777 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
HCH4g0006 780 Pfam K+ potassium transporter integral membrane domain 30 525 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0807 HCH-Chr13:7797032 HCH4g0006 HCH-Chr4:63819 0.00E+00 dispersed
HCH4g0006 HCH-Chr4:63819 HCH9g0012 HCH-Chr9:101601 2.10E-245 dispersed
HCH4g0006 HCH-Chr4:63819 HCH4g0007 HCH-Chr4:70784 8.40E-186 tandem
HCH1g1017 HCH-Chr1:58176627 HCH4g0006 HCH-Chr4:63819 0.00E+00 wgd
HCH4g0006 HCH-Chr4:63819 HCH9g0158 HCH-Chr9:943132 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0006 K03549 - rcu:8261016 1227.23