Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0007 ATGGACCGAGATAGAATTGAAGAAGGCAGCTCCCGAAGGAGATTACTGGTGGAGGTGGATACTGACACTGCCAGTAGTAGTGACTACAGGTGGGTCGATGGTAGTGAAGTTGATTCTTTTGATGTTGAAGAAAGAGACAGTGGATCTGTATCTTTTCGTAGGAGGTTGGTTAAGAAACCCAAAAGAGTTGATTCTTTTGATGTTGAAGCTATGGAGATTGCTGGTGCTTATCACCATTCAAAGGATGCTTCCACTTGGCAAACTCTTGCCTTGGCCTTTCAAACCCTTGGTGTTGTCTATGGTGACATGGGTACTAGCCCTTTATATGTCTTTTCTGATGTATTCACCAAGGTTCCTATTCAACAAGATGTTGATGTCTTGGGGGCTCTTTCCCTTGTTATTTACACTATTGCTCTTATTCCTTTGGCTAAATATGTTTTTGTTGTTCTTCGAGCCAATGACAATGGCGAAGGAGGAACATTTGCTTTGTATTCCCTCATCTGTAGGTATGCCAAAGTTAACTTGCTTCCTAATCGCCAGCCTGCTGATGAGCATATCTCCAGTTTTAAGCTCAAATTACCCACTCCTGAGTTGGAAAGGGCTTTACTTATTAAAGAGACTTTGGAGAAGAAATCATCCTTGAAAACCCTTATATTGCTTCTGGTTCTCCTGGGCACTTCTTTGATTATAGGGGATGGCATTCTAACCCCAGCCATATCAGTGATGTCTGCTGTGAGTGGTCTGCAGGGACAGATAAGGGGATTCAATACAGGTGCTGTTGTTATTGTATCAATTATAGTCCTTGTGATCTTGTTCAGCATACAGAAATTTGGGACTGGTAAAGTGGGATTTATGTTTGCTCCTGTGCTTGCTTTGTGGTTTTTTAGTCTGGGATCTATTGGACTTTACAATCTAGTAAAGTATGATATCACCGTTATAAGGGCTCTCAATCCTGCGTACATCTATTTATTCTTTAAGAAGAACTCAACGAATGCGTGGTCAGCTCTTGGTGGTTGTGTTTTGTGTGTAACAGGAGCTGAAGCAATGTTTGCTGATTTAGGCCATTTCTCTGTGCCAGCTGTACAGATTGCCTTCACATGTGTGGTTTTCCCCTGCCTTCTTTTGGCCTACATGGGCCAAGCTGCATACCTCATGAAACATCCAGAACTTTCAGCAAGAGTATTCTATAACTCTGTGCCAGCGAGTCTTTTTTGGCCAGTCTTTGTGATAGCAGCACTTGCTGCCATGATTGCGAGCCAAGCAATGATATCTGCTACCTTTTCTTGTGTCAAGCAATCTATGGCTCTTGGGTGTTTTCCCAGAATGAAGATCGTTCACACCTCAAAGAGGCGAATGGGTCAAATTTACATCCCTGTGATCAATTGGTTTTTGATGATCATGTGCGTAATTGTGGTTTCCATATTTCAGAGGACCACAGCCATTGCCAATGCTTATGGCATTGCTGAAGTCGGTGTCATGATGGTGAGCACTATCCTGGTGACTTTAGTAATGCTTCTGATCTGGCAGACAAATTTGTTTCTTGCCTTGTGTTTCCCACTTCTATTTGGATCAGTGGAATTCATCTACTTGTCTTCAGTGTTATCTAAAATCATAGAGGGTGGCTGGCTGCCGCTTGCTTTTGCTTTTGTCTTCCTCTCTGTGATGTATACATGGAACTATGGGAGTGTGTTGAAGTACCAAAGTGAGGTCAGAGAGAAGATATCAATGGATTTCTTGCTTGATCTCGGATCGACCCTTGGAACTGTAAGAGTTCCAGGAATTGGTCTCCTCTATAATGAGCTTGTCCAAGGCATTCCTGCAATTTTTGGGCAGTTTCTACTCAGCCTTCCAGCCATCCACTCAACAATTGTGTTTGTTTGCATCAAATATGTTCCAATACCTATGGTCCCTCAAGAGGAAAGGTTTTTGTTTAGGAGAGTTGGGCCAAAAGATTACCATATCTTTCGTTGCATTGCTCGGTATGGTTACAAGGATATCCGAAAGGAAGATCATCGTGCATTTGAGCAACTCTTGATGGAAAGCCTGGAGAAGTTCTTAAGAAGGGAAGCTCAAGATCTTGCCCTGGAGAGCAACTTCAATGAGTTGGAGTTTGACAATATTTCAGAGAATGAGGTGTCGGGGGATTCTCGAACCCCAGGTTATGAAGTGAATGAGGAGCTAAGAATTCCATTGATGCGTGGTGAAGAAATGGAAGAGGGAAAAACAGAAGGAGCTCTTGCAGCTGGTGCTGCACCATTACTACCATCCAGCATCATGGCATCAGATGAAGACCCTAGTCTGGAGTATGAACTATCAGCTCTTCGTGAAGCAATGGATTCTGGATTTACTTATCTGCTTGCACAAGGGGATGTCCGAGCGAAGAAAAGGTCATTTTTCATAAAGAAGCTTGTTATAAATTATTTCTATGCATTCCTAAGGAGGAACTGCAGAGGTGGTGCAGCAACTATGCGAGTTCCTCATATGAATATCATGCAAGTTGGGATGACTTACATGGTCTGA 2520 42.82 MDRDRIEEGSSRRRLLVEVDTDTASSSDYRWVDGSEVDSFDVEERDSGSVSFRRRLVKKPKRVDSFDVEAMEIAGAYHHSKDASTWQTLALAFQTLGVVYGDMGTSPLYVFSDVFTKVPIQQDVDVLGALSLVIYTIALIPLAKYVFVVLRANDNGEGGTFALYSLICRYAKVNLLPNRQPADEHISSFKLKLPTPELERALLIKETLEKKSSLKTLILLLVLLGTSLIIGDGILTPAISVMSAVSGLQGQIRGFNTGAVVIVSIIVLVILFSIQKFGTGKVGFMFAPVLALWFFSLGSIGLYNLVKYDITVIRALNPAYIYLFFKKNSTNAWSALGGCVLCVTGAEAMFADLGHFSVPAVQIAFTCVVFPCLLLAYMGQAAYLMKHPELSARVFYNSVPASLFWPVFVIAALAAMIASQAMISATFSCVKQSMALGCFPRMKIVHTSKRRMGQIYIPVINWFLMIMCVIVVSIFQRTTAIANAYGIAEVGVMMVSTILVTLVMLLIWQTNLFLALCFPLLFGSVEFIYLSSVLSKIIEGGWLPLAFAFVFLSVMYTWNYGSVLKYQSEVREKISMDFLLDLGSTLGTVRVPGIGLLYNELVQGIPAIFGQFLLSLPAIHSTIVFVCIKYVPIPMVPQEERFLFRRVGPKDYHIFRCIARYGYKDIRKEDHRAFEQLLMESLEKFLRREAQDLALESNFNELEFDNISENEVSGDSRTPGYEVNEELRIPLMRGEEMEEGKTEGALAAGAAPLLPSSIMASDEDPSLEYELSALREAMDSGFTYLLAQGDVRAKKRSFFIKKLVINYFYAFLRRNCRGGAATMRVPHMNIMQVGMTYMV 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 70784 80692 - evm.model.ptg000015l.7 HCH4g0007 542251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0007 839 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 68 839 IPR003855 GO:0006813(PANTHER)|GO:0015079(InterPro)|GO:0015079(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0071805(InterPro)
HCH4g0007 839 Pfam K+ potassium transporter C-terminal domain 592 837 IPR053952 -
HCH4g0007 839 NCBIfam potassium uptake protein 91 839 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH4g0007 839 Pfam K+ potassium transporter integral membrane domain 91 579 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0989 HCH-Chr11:41444472 HCH4g0007 HCH-Chr4:70784 8.50E-253 dispersed
HCH3g0501 HCH-Chr3:3243838 HCH4g0007 HCH-Chr4:70784 1.10E-188 dispersed
HCH4g0007 HCH-Chr4:70784 HCH5g1145 HCH-Chr5:38196589 4.40E-201 dispersed
HCH4g0006 HCH-Chr4:63819 HCH4g0007 HCH-Chr4:70784 8.40E-186 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0007 K03549 - csv:101202804 1348.18