Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0009 ATGGCGTCTCGGAGGATTTCCTCTCTCTTATTCTTATCTTCTTCTGCTCTCCTTTCTAAAGTGTCAGGGACAGGGAGAAGGCCTTACCATAGCATAAGCAGAGTACTTAGTGGCAATTTTAGCACCGCGGCTGCTGTTGAAAACCCCATTACCCCTTCTGTCAAAGTAAACTACACTCAACTCTTAATTAATGGACACTTTCTGGATTCTGTTTCAGGAAAAACTTTTCCTTCATTGGACCCAAGGACTGGTGAAGTCATTGCTCATGTGGCTGAAGGTGACGCCAAAGACGTTGATCTTGCCGTCTCCGCTGCTCGCAAGGCTTTTGATCAAGGGCCTTGGCCTAAGATGACTGCTTATGAGCGATCAAGGATACTTCTGCGATTTGCTGATTTGGTTGAAAAACATATGGATGAAGTGGCAGCCCTTGAAACTTGGGATAATGGAAAAACATTCGAACAGTCGCTTAAACTTGAAGTCCCAATGCTTGTACGCCTTTTTCGATACTATGGAGGATGGGCGGATAAGATTCATGGGCTCACAGTTCCATCTGATGGTTCATATAACGTTCAAACTTTGCACGAACCAATTGGTGTTGCTGGTCAGATTATTCCATGGAACTTTCCTCTTCTCATGTTTGCTTGGAAGGTTGGTCCAGCACTAGCATGTGGAAACACTGTTGTTCTGAAGACAGCTGAGCAAACACCTTTATCTGCTCTCTATGTGGCTAAGCTATTTCATGAGGCTGGACTTCCTGAAGGCGTTCTGAATATTATTTCTGGTTATGGACCGACTGCTGGTGCTGCTCTTTCCAGCCATATGGAAGTTGATAAGCTTGCTTTTACTGGATCGACAGAAACAGGGAAGATTGTACTTCAATTAGCTGCAAGAAGCAATCTGAAGCCAGTAACGTTGGAGCTAGGTGGAAAGTCCCCCTTCATTGTATGCGAGGATGCTGATGTGGATAAGGCCGTTGAGATGGCACACTTTGCCCTCTTCTTTAACCAGGGACAATGCTGCTGTGCTGGTTCTCGTACATTTGTTCATGAAAAAGTATACGACGAGTTTGTAGAAAAAGCAAGAAAACGAGCTGCAAATCGTGTTGTTGGAGATCCATTCCTGGGTGGAATTGAACAAGGCCCTCAGGTTGATGGTGAACAATTCAAAAAGATTTTGAGATATATAAAAGCTGGGATTGAAGGTGGAGCTACTCTTGAAGCTGGAGGAGAGAGGTTTGGTTCGAAGGGCAACTATATCCAGCCAACAGTTTTCTCAAACGTCGAGGATAACATGATAATAGCACAGGATGAGATCTTTGGTCCGGTACAGACAATCTTGAAATTCAAAAACCTTGATGAAGTGATAAGAAGGGCAAATGATAGTCAGTATGGGCTGGCCGCTGGGATCTTTACTCACAACATAGATACAGCCAACACCCTGACCCGTGCGCTGAGAGTTGGATCTGTGTGGATCAATTGCTTTGATATATTTGATGCTGCAGTTCCATTTGGTGGGTACAAGATGAGTGGACATGGCAGAGAAAAGGGCATCTACAGCCTCAACAATTACCTACAAGTGAAGGCTGTTGTCACTCCTTTGATCAACCCTGCCTGGCTTTAG 1620 44.63 MASRRISSLLFLSSSALLSKVSGTGRRPYHSISRVLSGNFSTAAAVENPITPSVKVNYTQLLINGHFLDSVSGKTFPSLDPRTGEVIAHVAEGDAKDVDLAVSAARKAFDQGPWPKMTAYERSRILLRFADLVEKHMDEVAALETWDNGKTFEQSLKLEVPMLVRLFRYYGGWADKIHGLTVPSDGSYNVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKTAEQTPLSALYVAKLFHEAGLPEGVLNIISGYGPTAGAALSSHMEVDKLAFTGSTETGKIVLQLAARSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFVEKARKRAANRVVGDPFLGGIEQGPQVDGEQFKKILRYIKAGIEGGATLEAGGERFGSKGNYIQPTVFSNVEDNMIIAQDEIFGPVQTILKFKNLDEVIRRANDSQYGLAAGIFTHNIDTANTLTRALRVGSVWINCFDIFDAAVPFGGYKMSGHGREKGIYSLNNYLQVKAVVTPLINPAWL 539
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 88079 91401 + evm.model.ptg000015l.9 HCH4g0009 542253
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0009 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 63 527 IPR016162 GO:0016491(InterPro)
HCH4g0009 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491(InterPro)
HCH4g0009 539 Pfam Aldehyde dehydrogenase family 70 529 IPR015590 GO:0016491(InterPro)
HCH4g0009 539 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 54 531 - GO:0004029(PANTHER)
HCH4g0009 539 CDD ALDH_F2BC 56 531 - -
HCH4g0009 539 FunFam Aldehyde dehydrogenase, putative 501 527 - -
HCH4g0009 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 498 IPR016163 GO:0016620(InterPro)
HCH4g0009 539 FunFam Mitochondrial aldehyde dehydrogenase 2 311 500 - -
HCH4g0009 539 SUPERFAMILY ALDH-like 55 534 IPR016161 GO:0016491(InterPro)
HCH4g0009 539 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 63 331 - -
HCH4g0009 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0009 HCH-Chr4:88079 HCH8g1377 HCH-Chr8:48506955 3.70E-249 dispersed
HCH14g0436 HCH-Chr14:33397735 HCH4g0009 HCH-Chr4:88079 1.00E-36 transposed
HCH6g1747 HCH-Chr6:49978929 HCH4g0009 HCH-Chr4:88079 3.60E-59 transposed
HCH7g0813 HCH-Chr7:15804548 HCH4g0009 HCH-Chr4:88079 4.00E-46 transposed
HCH8g0766 HCH-Chr8:44285862 HCH4g0009 HCH-Chr4:88079 6.40E-171 transposed
HCH8g1353 HCH-Chr8:48373517 HCH4g0009 HCH-Chr4:88079 4.40E-95 transposed
HCH4g0009 HCH-Chr4:88079 HCH8g1376 HCH-Chr8:48501650 5.10E-243 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0009 K00128 - csv:101202756 931.398