Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0009 ATGGCGTCTCGGAGGATTTCCTCTCTCTTATTCTTATCTTCTTCTGCTCTCCTTTCTAAAGTGTCAGGGACAGGGAGAAGGCCTTACCATAGCATAAGCAGAGTACTTAGTGGCAATTTTAGCACCGCGGCTGCTGTTGAAAACCCCATTACCCCTTCTGTCAAAGTAAACTACACTCAACTCTTAATTAATGGACACTTTCTGGATTCTGTTTCAGGAAAAACTTTTCCTTCATTGGACCCAAGGACTGGTGAAGTCATTGCTCATGTGGCTGAAGGTGACGCCAAAGACGTTGATCTTGCCGTCTCCGCTGCTCGCAAGGCTTTTGATCAAGGGCCTTGGCCTAAGATGACTGCTTATGAGCGATCAAGGATACTTCTGCGATTTGCTGATTTGGTTGAAAAACATATGGATGAAGTGGCAGCCCTTGAAACTTGGGATAATGGAAAAACATTCGAACAGTCGCTTAAACTTGAAGTCCCAATGCTTGTACGCCTTTTTCGATACTATGGAGGATGGGCGGATAAGATTCATGGGCTCACAGTTCCATCTGATGGTTCATATAACGTTCAAACTTTGCACGAACCAATTGGTGTTGCTGGTCAGATTATTCCATGGAACTTTCCTCTTCTCATGTTTGCTTGGAAGGTTGGTCCAGCACTAGCATGTGGAAACACTGTTGTTCTGAAGACAGCTGAGCAAACACCTTTATCTGCTCTCTATGTGGCTAAGCTATTTCATGAGGCTGGACTTCCTGAAGGCGTTCTGAATATTATTTCTGGTTATGGACCGACTGCTGGTGCTGCTCTTTCCAGCCATATGGAAGTTGATAAGCTTGCTTTTACTGGATCGACAGAAACAGGGAAGATTGTACTTCAATTAGCTGCAAGAAGCAATCTGAAGCCAGTAACGTTGGAGCTAGGTGGAAAGTCCCCCTTCATTGTATGCGAGGATGCTGATGTGGATAAGGCCGTTGAGATGGCACACTTTGCCCTCTTCTTTAACCAGGGACAATGCTGCTGTGCTGGTTCTCGTACATTTGTTCATGAAAAAGTATACGACGAGTTTGTAGAAAAAGCAAGAAAACGAGCTGCAAATCGTGTTGTTGGAGATCCATTCCTGGGTGGAATTGAACAAGGCCCTCAGGTTGATGGTGAACAATTCAAAAAGATTTTGAGATATATAAAAGCTGGGATTGAAGGTGGAGCTACTCTTGAAGCTGGAGGAGAGAGGTTTGGTTCGAAGGGCAACTATATCCAGCCAACAGTTTTCTCAAACGTCGAGGATAACATGATAATAGCACAGGATGAGATCTTTGGTCCGGTACAGACAATCTTGAAATTCAAAAACCTTGATGAAGTGATAAGAAGGGCAAATGATAGTCAGTATGGGCTGGCCGCTGGGATCTTTACTCACAACATAGATACAGCCAACACCCTGACCCGTGCGCTGAGAGTTGGATCTGTGTGGATCAATTGCTTTGATATATTTGATGCTGCAGTTCCATTTGGTGGGTACAAGATGAGTGGACATGGCAGAGAAAAGGGCATCTACAGCCTCAACAATTACCTACAAGTGAAGGCTGTTGTCACTCCTTTGATCAACCCTGCCTGGCTTTAG 1620 44.63 MASRRISSLLFLSSSALLSKVSGTGRRPYHSISRVLSGNFSTAAAVENPITPSVKVNYTQLLINGHFLDSVSGKTFPSLDPRTGEVIAHVAEGDAKDVDLAVSAARKAFDQGPWPKMTAYERSRILLRFADLVEKHMDEVAALETWDNGKTFEQSLKLEVPMLVRLFRYYGGWADKIHGLTVPSDGSYNVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKTAEQTPLSALYVAKLFHEAGLPEGVLNIISGYGPTAGAALSSHMEVDKLAFTGSTETGKIVLQLAARSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFVEKARKRAANRVVGDPFLGGIEQGPQVDGEQFKKILRYIKAGIEGGATLEAGGERFGSKGNYIQPTVFSNVEDNMIIAQDEIFGPVQTILKFKNLDEVIRRANDSQYGLAAGIFTHNIDTANTLTRALRVGSVWINCFDIFDAAVPFGGYKMSGHGREKGIYSLNNYLQVKAVVTPLINPAWL 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 88079 91401 + evm.model.ptg000015l.9 HCH4g0009 542253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0009 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 63 527 IPR016162 GO:0016491(InterPro)
HCH4g0009 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491(InterPro)
HCH4g0009 539 Pfam Aldehyde dehydrogenase family 70 529 IPR015590 GO:0016491(InterPro)
HCH4g0009 539 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 54 531 - GO:0004029(PANTHER)
HCH4g0009 539 CDD ALDH_F2BC 56 531 - -
HCH4g0009 539 FunFam Aldehyde dehydrogenase, putative 501 527 - -
HCH4g0009 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 498 IPR016163 GO:0016620(InterPro)
HCH4g0009 539 FunFam Mitochondrial aldehyde dehydrogenase 2 311 500 - -
HCH4g0009 539 SUPERFAMILY ALDH-like 55 534 IPR016161 GO:0016491(InterPro)
HCH4g0009 539 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 63 331 - -
HCH4g0009 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0009 K00128 - - csv:101202756 931.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0009 HCH-Chr4:88079 HCH8g1377 HCH-Chr8:48506955 3.70E-249 dispersed
HCH14g0436 HCH-Chr14:33397735 HCH4g0009 HCH-Chr4:88079 1.00E-36 transposed
HCH6g1747 HCH-Chr6:49978929 HCH4g0009 HCH-Chr4:88079 3.60E-59 transposed
HCH7g0813 HCH-Chr7:15804548 HCH4g0009 HCH-Chr4:88079 4.00E-46 transposed
HCH8g0766 HCH-Chr8:44285862 HCH4g0009 HCH-Chr4:88079 6.40E-171 transposed
HCH8g1353 HCH-Chr8:48373517 HCH4g0009 HCH-Chr4:88079 4.40E-95 transposed
HCH4g0009 HCH-Chr4:88079 HCH8g1376 HCH-Chr8:48501650 5.10E-243 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0766 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 72.8 5.5e-215 743.8
HCH8g1377 . 55 539 Aldehyde Dehydrogenase Gene Family AT3G24503 55.8 1.6e-158 556.2
HCH8g1376 . 60 544 Aldehyde Dehydrogenase Gene Family AT3G24503 55.1 1.1e-157 553.5
HCH4g0009 . 37 539 Aldehyde Dehydrogenase Gene Family AT3G24503 53.4 5.2e-157 551.2
HCH8g1377 . 1 539 Aldehyde Dehydrogenase Gene Family AT3G48000 80.7 1.6e-257 885.2
HCH8g1376 . 5 544 Aldehyde Dehydrogenase Gene Family AT3G48000 79.1 5.5e-253 870.2
HCH4g0009 . 1 539 Aldehyde Dehydrogenase Gene Family AT3G48000 74.2 2.3e-243 838.2
HCH8g0766 . 5 502 Aldehyde Dehydrogenase Gene Family AT3G48000 57.4 5.2e-171 597.8
HCH8g1377 . 5 383 Aldehyde Dehydrogenase Gene Family AT1G23800 75.3 3.5e-167 584.7
HCH4g0009 . 1 383 Aldehyde Dehydrogenase Gene Family AT1G23800 74.6 4.6e-167 584.3
HCH8g1376 . 5 388 Aldehyde Dehydrogenase Gene Family AT1G23800 70.9 9.2e-160 560.1
HCH8g0766 . 10 346 Aldehyde Dehydrogenase Gene Family AT1G23800 56.7 3.1e-107 385.6
HCH12g0822 . 10 484 Aldehyde Dehydrogenase Gene Family AT4G34240 65.5 2.3e-182 635.6
HCH12g0822 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 73.7 3.1e-179 624.8
HCH13g1378 . 63 477 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 2.1e-119 426.0
HCH13g1378 . 3 479 Aldehyde Dehydrogenase Gene Family AT4G36250 62.5 1.2e-182 636.3
HCH2g0957 . 26 530 Aldehyde Dehydrogenase Gene Family AT1G79440 76.4 5.1e-235 810.4
HCH7g0813 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 80.9 5.7e-235 810.4
HCH14g0436 . 177 645 Aldehyde Dehydrogenase Gene Family AT2G14170 65.3 4.6e-184 641.3
HCH8g1353 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.2 3.4e-249 857.4
HCH8g1353 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.7 3.2e-255 877.5
HCH10g0303 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.0 1.3e-267 918.7
HCH3g0274 . 18 554 Aldehyde Dehydrogenase Gene Family AT5G62530 79.7 1.3e-265 912.1
HCH6g1747 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.5 9.9e-280 959.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001596 2 4 2 1 4 2 3 2 2 1 2 2 3 1 2 3 2 3 3 2 2 3 2 2 2 2 2 2 3 5 71