Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g0009 | ATGGCGTCTCGGAGGATTTCCTCTCTCTTATTCTTATCTTCTTCTGCTCTCCTTTCTAAAGTGTCAGGGACAGGGAGAAGGCCTTACCATAGCATAAGCAGAGTACTTAGTGGCAATTTTAGCACCGCGGCTGCTGTTGAAAACCCCATTACCCCTTCTGTCAAAGTAAACTACACTCAACTCTTAATTAATGGACACTTTCTGGATTCTGTTTCAGGAAAAACTTTTCCTTCATTGGACCCAAGGACTGGTGAAGTCATTGCTCATGTGGCTGAAGGTGACGCCAAAGACGTTGATCTTGCCGTCTCCGCTGCTCGCAAGGCTTTTGATCAAGGGCCTTGGCCTAAGATGACTGCTTATGAGCGATCAAGGATACTTCTGCGATTTGCTGATTTGGTTGAAAAACATATGGATGAAGTGGCAGCCCTTGAAACTTGGGATAATGGAAAAACATTCGAACAGTCGCTTAAACTTGAAGTCCCAATGCTTGTACGCCTTTTTCGATACTATGGAGGATGGGCGGATAAGATTCATGGGCTCACAGTTCCATCTGATGGTTCATATAACGTTCAAACTTTGCACGAACCAATTGGTGTTGCTGGTCAGATTATTCCATGGAACTTTCCTCTTCTCATGTTTGCTTGGAAGGTTGGTCCAGCACTAGCATGTGGAAACACTGTTGTTCTGAAGACAGCTGAGCAAACACCTTTATCTGCTCTCTATGTGGCTAAGCTATTTCATGAGGCTGGACTTCCTGAAGGCGTTCTGAATATTATTTCTGGTTATGGACCGACTGCTGGTGCTGCTCTTTCCAGCCATATGGAAGTTGATAAGCTTGCTTTTACTGGATCGACAGAAACAGGGAAGATTGTACTTCAATTAGCTGCAAGAAGCAATCTGAAGCCAGTAACGTTGGAGCTAGGTGGAAAGTCCCCCTTCATTGTATGCGAGGATGCTGATGTGGATAAGGCCGTTGAGATGGCACACTTTGCCCTCTTCTTTAACCAGGGACAATGCTGCTGTGCTGGTTCTCGTACATTTGTTCATGAAAAAGTATACGACGAGTTTGTAGAAAAAGCAAGAAAACGAGCTGCAAATCGTGTTGTTGGAGATCCATTCCTGGGTGGAATTGAACAAGGCCCTCAGGTTGATGGTGAACAATTCAAAAAGATTTTGAGATATATAAAAGCTGGGATTGAAGGTGGAGCTACTCTTGAAGCTGGAGGAGAGAGGTTTGGTTCGAAGGGCAACTATATCCAGCCAACAGTTTTCTCAAACGTCGAGGATAACATGATAATAGCACAGGATGAGATCTTTGGTCCGGTACAGACAATCTTGAAATTCAAAAACCTTGATGAAGTGATAAGAAGGGCAAATGATAGTCAGTATGGGCTGGCCGCTGGGATCTTTACTCACAACATAGATACAGCCAACACCCTGACCCGTGCGCTGAGAGTTGGATCTGTGTGGATCAATTGCTTTGATATATTTGATGCTGCAGTTCCATTTGGTGGGTACAAGATGAGTGGACATGGCAGAGAAAAGGGCATCTACAGCCTCAACAATTACCTACAAGTGAAGGCTGTTGTCACTCCTTTGATCAACCCTGCCTGGCTTTAG | 1620 | 44.63 | MASRRISSLLFLSSSALLSKVSGTGRRPYHSISRVLSGNFSTAAAVENPITPSVKVNYTQLLINGHFLDSVSGKTFPSLDPRTGEVIAHVAEGDAKDVDLAVSAARKAFDQGPWPKMTAYERSRILLRFADLVEKHMDEVAALETWDNGKTFEQSLKLEVPMLVRLFRYYGGWADKIHGLTVPSDGSYNVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVLKTAEQTPLSALYVAKLFHEAGLPEGVLNIISGYGPTAGAALSSHMEVDKLAFTGSTETGKIVLQLAARSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFVEKARKRAANRVVGDPFLGGIEQGPQVDGEQFKKILRYIKAGIEGGATLEAGGERFGSKGNYIQPTVFSNVEDNMIIAQDEIFGPVQTILKFKNLDEVIRRANDSQYGLAAGIFTHNIDTANTLTRALRVGSVWINCFDIFDAAVPFGGYKMSGHGREKGIYSLNNYLQVKAVVTPLINPAWL | 539 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 88079 | 91401 | + | evm.model.ptg000015l.9 | HCH4g0009 | 542253 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g0009 | 539 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 63 | 527 | IPR016162 | GO:0016491(InterPro) | |
| HCH4g0009 | 539 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 333 | 344 | IPR016160 | GO:0016491(InterPro) | |
| HCH4g0009 | 539 | Pfam | Aldehyde dehydrogenase family | 70 | 529 | IPR015590 | GO:0016491(InterPro) | |
| HCH4g0009 | 539 | PANTHER | ALDEHYDE DEHYDROGENASE-RELATED | 54 | 531 | - | GO:0004029(PANTHER) | |
| HCH4g0009 | 539 | CDD | ALDH_F2BC | 56 | 531 | - | - | |
| HCH4g0009 | 539 | FunFam | Aldehyde dehydrogenase, putative | 501 | 527 | - | - | |
| HCH4g0009 | 539 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 309 | 498 | IPR016163 | GO:0016620(InterPro) | |
| HCH4g0009 | 539 | FunFam | Mitochondrial aldehyde dehydrogenase 2 | 311 | 500 | - | - | |
| HCH4g0009 | 539 | SUPERFAMILY | ALDH-like | 55 | 534 | IPR016161 | GO:0016491(InterPro) | |
| HCH4g0009 | 539 | FunFam | ALD5p Mitochondrial aldehyde dehydrogenase | 63 | 331 | - | - | |
| HCH4g0009 | 539 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 305 | 312 | IPR029510 | GO:0016491(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH4g0009 | HCH-Chr4:88079 | HCH8g1377 | HCH-Chr8:48506955 | 3.70E-249 | dispersed | |
| HCH14g0436 | HCH-Chr14:33397735 | HCH4g0009 | HCH-Chr4:88079 | 1.00E-36 | transposed | |
| HCH6g1747 | HCH-Chr6:49978929 | HCH4g0009 | HCH-Chr4:88079 | 3.60E-59 | transposed | |
| HCH7g0813 | HCH-Chr7:15804548 | HCH4g0009 | HCH-Chr4:88079 | 4.00E-46 | transposed | |
| HCH8g0766 | HCH-Chr8:44285862 | HCH4g0009 | HCH-Chr4:88079 | 6.40E-171 | transposed | |
| HCH8g1353 | HCH-Chr8:48373517 | HCH4g0009 | HCH-Chr4:88079 | 4.40E-95 | transposed | |
| HCH4g0009 | HCH-Chr4:88079 | HCH8g1376 | HCH-Chr8:48501650 | 5.10E-243 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g0009 | K00128 | - | csv:101202756 | 931.398 |