Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0030 ATGTCAACACTCGACCATCTCCTCCTTGATCCATCGGATCAGATTCGCTATGTGCAATGTGGTCTTTGCAGCACCATATTGCTGGTAAATGTACCATACAACAACTTATCAATGGTGGTGACTGTAAGATGTGGGAACTGCACAGGCCTCCTCTCTGTCAATATGGCAAAGGCCTCTTTCTTCCCTCTTGATCTTCTCACTTCTCTCTCTCATAATATGCCAAATGAAGATTTTGATCAAGAAATACAAATTCAACAAGACATTGAAAGCCATAACACATCGCAGTCAAACAGTACCATTCCGTTGTGTGATCATAATGAAAATATTGAAGAATTAGCGGAAGATAAGGATGTGTTCCTCATTCCACCCACTCCTGTTGTCAACAAACCCCCTGAGAAAAAACAGCGAGCCCCATCAGCTTATAACCAATTCATCAAGGAAGAGATTAGAAGGCTTAAGTCCGAGAATCCACAAATGCCTCATAAAGAGGCTTTCAAGACAGCTGCAAAGAATTGGGCGTATCTTCCTCCAATTCATGGTGAAGGAGAGAGAGGAAAGAAACAGTAG 567 42.15 MSTLDHLLLDPSDQIRYVQCGLCSTILLVNVPYNNLSMVVTVRCGNCTGLLSVNMAKASFFPLDLLTSLSHNMPNEDFDQEIQIQQDIESHNTSQSNSTIPLCDHNENIEELAEDKDVFLIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKSENPQMPHKEAFKTAAKNWAYLPPIHGEGERGKKQ 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 194527 195977 - evm.model.ptg000015l.30 HCH4g0030 542274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0030 188 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 134 188 IPR009071 -
HCH4g0030 188 CDD HMG-box_SF 136 177 - -
HCH4g0030 188 SUPERFAMILY HMG-box 125 177 IPR036910 -
HCH4g0030 188 Gene3D High mobility group box domain 127 180 IPR036910 -
HCH4g0030 188 PANTHER PROTEIN YABBY 6-RELATED 11 181 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
HCH4g0030 188 Pfam YABBY protein 11 179 IPR006780 GO:0007275(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0030 K25796 - - csv:101211011 263.462
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1044 HCH-Chr1:58316435 HCH4g0030 HCH-Chr4:194527 1.70E-38 dispersed
HCH4g0030 HCH-Chr4:194527 HCH8g0848 HCH-Chr8:44945370 1.30E-28 dispersed
HCH4g0030 HCH-Chr4:194527 HCH5g0398 HCH-Chr5:2620127 3.10E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0866 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 5.5e-48 187.6
HCH5g0398 . 73 230 C2C2-YABBY Transcription Factor Family AT2G45190 62.0 9.5e-47 183.3
HCH2g1305 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 65.7 1.7e-52 202.6
HCH10g0406 . 5 182 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.2e-42 169.9
HCH5g0398 . 30 220 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 2.1e-42 169.1
HCH6g0989 . 18 198 C2C2-YABBY Transcription Factor Family AT1G08465 52.4 1.3e-41 166.4
HCH8g0848 . 5 172 C2C2-YABBY Transcription Factor Family AT1G08465 53.2 1.3e-41 166.4
HCH5g0398 . 40 229 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 7.3e-52 200.7
HCH6g0989 . 28 219 C2C2-YABBY Transcription Factor Family AT4G00180 51.2 1.8e-42 169.5
HCH1g1044 . 1 170 C2C2-YABBY Transcription Factor Family AT1G23420 56.0 6.8e-39 157.9
HCH4g0030 . 2 181 C2C2-YABBY Transcription Factor Family AT1G23420 51.1 2.8e-37 152.5
HCH10g0406 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 70.5 1.1e-60 229.6
HCH8g0848 . 7 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.9 4.8e-59 224.2
HCH2g1305 . 1 170 C2C2-YABBY Transcription Factor Family AT2G26580 58.5 1.7e-48 189.1
HCH5g0398 . 30 194 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 1.5e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014330 0 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33392 PF04690 YABBY 7.20E-56 CL0114 HCH TF