Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g0030 | ATGTCAACACTCGACCATCTCCTCCTTGATCCATCGGATCAGATTCGCTATGTGCAATGTGGTCTTTGCAGCACCATATTGCTGGTAAATGTACCATACAACAACTTATCAATGGTGGTGACTGTAAGATGTGGGAACTGCACAGGCCTCCTCTCTGTCAATATGGCAAAGGCCTCTTTCTTCCCTCTTGATCTTCTCACTTCTCTCTCTCATAATATGCCAAATGAAGATTTTGATCAAGAAATACAAATTCAACAAGACATTGAAAGCCATAACACATCGCAGTCAAACAGTACCATTCCGTTGTGTGATCATAATGAAAATATTGAAGAATTAGCGGAAGATAAGGATGTGTTCCTCATTCCACCCACTCCTGTTGTCAACAAACCCCCTGAGAAAAAACAGCGAGCCCCATCAGCTTATAACCAATTCATCAAGGAAGAGATTAGAAGGCTTAAGTCCGAGAATCCACAAATGCCTCATAAAGAGGCTTTCAAGACAGCTGCAAAGAATTGGGCGTATCTTCCTCCAATTCATGGTGAAGGAGAGAGAGGAAAGAAACAGTAG | 567 | 42.15 | MSTLDHLLLDPSDQIRYVQCGLCSTILLVNVPYNNLSMVVTVRCGNCTGLLSVNMAKASFFPLDLLTSLSHNMPNEDFDQEIQIQQDIESHNTSQSNSTIPLCDHNENIEELAEDKDVFLIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKSENPQMPHKEAFKTAAKNWAYLPPIHGEGERGKKQ | 188 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 194527 | 195977 | - | evm.model.ptg000015l.30 | HCH4g0030 | 542274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g0030 | 188 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 134 | 188 | IPR009071 | - | |
| HCH4g0030 | 188 | CDD | HMG-box_SF | 136 | 177 | - | - | |
| HCH4g0030 | 188 | SUPERFAMILY | HMG-box | 125 | 177 | IPR036910 | - | |
| HCH4g0030 | 188 | Gene3D | High mobility group box domain | 127 | 180 | IPR036910 | - | |
| HCH4g0030 | 188 | PANTHER | PROTEIN YABBY 6-RELATED | 11 | 181 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER) | |
| HCH4g0030 | 188 | Pfam | YABBY protein | 11 | 179 | IPR006780 | GO:0007275(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH1g1044 | HCH-Chr1:58316435 | HCH4g0030 | HCH-Chr4:194527 | 1.70E-38 | dispersed | |
| HCH4g0030 | HCH-Chr4:194527 | HCH8g0848 | HCH-Chr8:44945370 | 1.30E-28 | dispersed | |
| HCH4g0030 | HCH-Chr4:194527 | HCH5g0398 | HCH-Chr5:2620127 | 3.10E-30 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33392 | PF04690 | YABBY | 7.20E-56 | CL0114 | HCH | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH4g0030 | K25796 | - | csv:101211011 | 263.462 |