Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0034 ATGGAAAGACATTTTGGTTTTGTATTGTGGAAAGTGATTTTTGTGGTTTGGGCATTGTTGGTAGTTGTTTCTGCTACACTGTCCCCTTCTGGTGTTAACTATGAAGTTGTAGCTTTGATGGCCATAAAAAGTGATTTAATAGATCCCCACAATGTTCTGGAAAACTGGGATAGTAATTCTGTGGATCCTTGTAGCTGGAGAATGGTTACTTGTTCTCCAGATGGATATGTTTCTGCTCTGGGGTTTCCTAGTCAGAGTTTATCTGGAACCTTATCACCAGGGATTGGAAACCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCAGGCTCAATTCCTTCGAGCATTGGAAAGTTAGAGAACCTCCGGACTCTTGATCTCTCCAACAATGAGTTTCGTGGTGTAATACCCGGTTCCCTGGGGGACTTGAAGAAACTAAACTATCTGCGACTAAATAACAACAGCCTTACTGGACCCTGCCCTGAGTCTCTATCAACAGTTCAAGGTCTCACACTCGTGGACCTGTCGTTCAACAACTTGAGTGGAACCTTGCCCAAAATATCAGCTAGAACATTCAAAATTGTTGGTAACCCTTTGATCTGTGGCCCAACCAACTGTTCCGCTGTCTTTCCAGAGCCGCTGTCACTTGCCCCAGATGCTCTTGAAGGGAATTTGGAATCTGATAAGAGCCACCACATGGCTATAGCTTTTGGGGCAAGTTTTAGTGCGGCTTTTGTTGTGTTAGTCCTCATTGGGCTACTTGTTTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTCCGGGCAGCAACCGATCATTTCAACTCAAAGAATATCTTGGGACGAGGTGGCTTTGGAATTGTATACAAGGGCTGCTTGAATGATGGGACTCTTGTAGCAGTTAAAAGGTTGAAGGATTACAATGCTGCTGGTGGAGAAATCCAATTCCAGACTGAAGTGGAGATGATAAGCTTAGCTGTACATCGAAATCTCCTCAGGCTTTTTGGCTTCTGTTCTACTGAAAGTGAAAGACTTCTGGTATACCCATTCATGCCCAATGGAAGTGTAGCATCTCGACTAAGAGATCATATCCATGGGCAACCAGCTCTAGATTGGGCAATGAGAAAGGGAATAGCCTTGGGTACAGCTAGAGGATTGGTATACTTGCATGAGCAGTGTGACCCTAAAATTATCCATCGTGACGTGAAAGCAGCGAACATTTTGCTTGATGAAGACTTCGAGGCTGTTGTTGGAGACTTTGGTTTGGCAAAACTTTTGGATCACAGGGATTCTCATGTGACGACAGCCGTGCGTGGCACTGTTGGGCATATTGCTCCAGAGTACTTGTCAACTGGGCAATCATCAGAAAAGACTGATGTGTTTGGGTTTGGGATCTTGCTCTTGGAGTTAATTACCGGTCAGAAGGCACTAGATTTCGGTCGTGGAGCAAACCAGAAAGGCGTGATGCTTGATTGGGTGAAAAAGCTGCACCAGGAGGGAAAGCTAAATCTGATGGTGGATAAGGATTTAAAGGGAAACTTTGACAGAGTTGAGTTAGAAGAAATGGTTCAAGTTGCCCTCTTATGCACTCAGTTCAATCCTACTCACAGACCGAAAATGTCTGAAGTATTAAAAATGTTGGAAGGGGACGGCTTAGCTGAAAAATGGGAAGCTTCACAGCATATAGATACACCTAGATTCCGATTATGTGATAATCCCCCACAACGGTACTCAGATTATATAGAAGAATCTTCTCTGATAGTAGAAGCCATGGAGCTTTCAGGGCCCAGATGA 1872 43.86 MERHFGFVLWKVIFVVWALLVVVSATLSPSGVNYEVVALMAIKSDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGFPSQSLSGTLSPGIGNLSKLESVLLQNNDISGSIPSSIGKLENLRTLDLSNNEFRGVIPGSLGDLKKLNYLRLNNNSLTGPCPESLSTVQGLTLVDLSFNNLSGTLPKISARTFKIVGNPLICGPTNCSAVFPEPLSLAPDALEGNLESDKSHHMAIAFGASFSAAFVVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNAAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVASRLRDHIHGQPALDWAMRKGIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNLMVDKDLKGNFDRVELEEMVQVALLCTQFNPTHRPKMSEVLKMLEGDGLAEKWEASQHIDTPRFRLCDNPPQRYSDYIEESSLIVEAMELSGPR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 212341 215955 + evm.model.ptg000015l.34 HCH4g0034 542278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0034 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 212 - -
HCH4g0034 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0034 623 ProSiteProfiles Protein kinase domain profile. 300 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0034 623 FunFam Somatic embryogenesis receptor kinase 1 269 376 - -
HCH4g0034 623 SUPERFAMILY L domain-like 33 194 - -
HCH4g0034 623 Gene3D Ribonuclease Inhibitor 32 211 IPR032675 -
HCH4g0034 623 SMART serkin_6 300 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0034 623 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524(InterPro)
HCH4g0034 623 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
HCH4g0034 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 623 - -
HCH4g0034 623 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
HCH4g0034 623 SUPERFAMILY Protein kinase-like (PK-like) 284 583 IPR011009 -
HCH4g0034 623 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515(InterPro)
HCH4g0034 623 Gene3D Transferase(Phosphotransferase) domain 1 377 592 - -
HCH4g0034 623 Pfam Protein kinase domain 301 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0034 623 FunFam Somatic embryogenesis receptor-like kinase 1 377 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1482 HCH-Chr12:40406051 HCH4g0034 HCH-Chr4:212341 1.20E-142 dispersed
HCH13g0647 HCH-Chr13:5064122 HCH4g0034 HCH-Chr4:212341 1.40E-196 dispersed
HCH13g1275 HCH-Chr13:40656402 HCH4g0034 HCH-Chr4:212341 6.70E-138 dispersed
HCH14g0996 HCH-Chr14:37289356 HCH4g0034 HCH-Chr4:212341 1.10E-156 dispersed
HCH1g0837 HCH-Chr1:56965396 HCH4g0034 HCH-Chr4:212341 3.30E-193 dispersed
HCH2g0315 HCH-Chr2:43103121 HCH4g0034 HCH-Chr4:212341 3.00E-114 dispersed
HCH3g0284 HCH-Chr3:1800580 HCH4g0034 HCH-Chr4:212341 6.90E-71 dispersed
HCH4g0034 HCH-Chr4:212341 HCH8g0968 HCH-Chr8:45826831 1.20E-166 dispersed
HCH4g0034 HCH-Chr4:212341 HCH4g0038 HCH-Chr4:237869 5.10E-61 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81433 PF00069 Pkinase 3.40E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0034 - - - 0.0