Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0036 ATGGAGGATTTGTACGGCATGCAATCTTCCATGGATTACTTATCGAAACCCTTGATTTCACATGAAAATTTTATCCTTCCCGTCGATTACCAAACCTTCCTTTCATCCACTAACTTCCGCGATCGGATTGGGATTCCTATGTTCGGATCCGATGAAGTATTGATTTCGACTGCTTCCGCTGCTCTATCTGAAGCCGAAGAAGCACCAGAGTATCCGCTGGAAGAAGAAGACATTCTCAGTGTTATCAAAGCCAAAATTGCATCACATCCTTCCTATCCTCGTTTGCTTCATGCTTTTATTGACTGCCAAAAGGTAGGAGCGCCTGCGGAGATGTCATGCTTATTAGAAGAAATCCGGCGAGAAAACGACAGCGAGGAACAAAACGCAATGTCCACGTGCTTTGGAGCTGATCCCGAGCTCGATGAGTTCATGGAAACGTACTGTGAGATACTGGTAAAGTATAAATCAGATCTATCAAAGCCTTTTTATGAAGCTTCTTCCTTCTTCAATAACATTCAACTTCAACTTGCTAACCTTTGCGCTCAATCTGCCTCCTCTACCAGAACTCCTTCCAATGAGGATGCTATATCATCAGATGACGAGTTCAACTGGGGAGAGAGAGAGTTACGAGATGCTCAAATGAGATTAGAAGACAAAGGTCTTAAAAATATGCTCATAAGTAGATTTGGCAGCCACATTGGTACCTTGAAACTGGAGTTCTCAAAGAAGAAGAAGAAAGGAAAGCTTCCAAAAGAAGGAAGGAAAGTACTACTTGAATGGTGGAATGTTCACAATAAATGGCCATATCCTACTGAAGGCGATAAGATTGAGCTGGCAGAGACAACTGGACTTGATCCCAAACAAATTAATAATTGGTTCATTAATCAACGAAAGCGGCACTGGAAACCTTCTGAGAGTATGCAATTCACAGCAATGGATAGTCTGTCTGAACGATTTTTGCAATAA 966 41.93 MEDLYGMQSSMDYLSKPLISHENFILPVDYQTFLSSTNFRDRIGIPMFGSDEVLISTASAALSEAEEAPEYPLEEEDILSVIKAKIASHPSYPRLLHAFIDCQKVGAPAEMSCLLEEIRRENDSEEQNAMSTCFGADPELDEFMETYCEILVKYKSDLSKPFYEASSFFNNIQLQLANLCAQSASSTRTPSNEDAISSDDEFNWGERELRDAQMRLEDKGLKNMLISRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHNKWPYPTEGDKIELAETTGLDPKQINNWFINQRKRHWKPSESMQFTAMDSLSERFLQ 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 226759 233325 + evm.model.ptg000015l.36 HCH4g0036 542280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0036 321 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH4g0036 321 SUPERFAMILY Homeodomain-like 241 313 IPR009057 -
HCH4g0036 321 Pfam ELK domain 221 241 IPR005539 GO:0003677(InterPro)
HCH4g0036 321 CDD homeodomain 254 304 IPR001356 GO:0003677(InterPro)
HCH4g0036 321 SMART KNOX1_2 80 124 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH4g0036 321 SMART HOX_1 242 307 IPR001356 GO:0003677(InterPro)
HCH4g0036 321 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH4g0036 321 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677(InterPro)
HCH4g0036 321 SMART KNOX2_2 130 181 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH4g0036 321 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 312 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH4g0036 321 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH4g0036 321 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH4g0036 321 Gene3D - 239 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0036 HCH-Chr4:226759 HCH7g0260 HCH-Chr7:1790952 2.90E-60 dispersed
HCH1g1049 HCH-Chr1:58343048 HCH4g0036 HCH-Chr4:226759 5.00E-108 wgd
HCH4g0036 HCH-Chr4:226759 HCH8g1394 HCH-Chr8:48650714 8.40E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33393 PF03791 KNOX2 1.10E-21 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0036 - - - 0.0