Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0039 ATGAAGACTAAATCACCATTTCCTTCCCATTACGTTTTCTTCCTTTTTAACATCTTTCTTCTGTCTCTGGAAACATCAACCATGGCAGACCCCAGATCCCAAACTGTCAAGATAATGTGTGGAACCGAATTAGAGCATAATACTACTGCTTTTGTGCCGAATTTCGTTGGTACAATGCAGGTAATTAGTGAACAGATGAGAACTTCAGGTTTTGGAGTTGCAGTTGTAGGGAAAGGACCTGACACAAACTATGGCTTGGCTCAATGCTATGGAGATTTGTCACTCATGGATTGTGTGTTATGTTATGCCGAGGCACGGACCGTCCTTCCTCAATGCTTCCCTTTCAACGGTGGCAGAATTTTCCTTGATGGCTGCTTCATGAGAGCTGAAAACTACAGCTTCTATGAGGAATTTCAAGGACCTCTGGATAGAGCTGTGTGTGGAAACTCTTCCATCGGAAGAAGAAACTCCATTTTTGAGCAATCAATCAAGCAGGCTGTAGCACAAGCAATTGAAAATGCGCCGAGCAATCGAGGGTATGCGAGAGTTCAGATGGCACTGCCGGGGACTGTGAATGAGTCTGTTTACTTGTTAGCTCAGTGCTGGAGAAATCTGAATCGCAGCTCATGTGTGTCGTGTTTGAGAAACGCGTCTTCTTCGCTCCTAAGATGCTTACCAAGTTCAGAAGCTCGAGCTCTCAACACTGGCTGCTTCATGAGATACTCAAACGTGAACTTCCTCAATGCAGAAGCCATAAGTGTGAGGTCAAGAGGTACCATCATAGCAATTGTAATCTCAGTAGTAAGTTCTGTTGCTGTTTTGATTGTTGGAGTTCTAATTGGTGCCTATATCTGGAATCAAAGATATATAAAGAAGAAACGAAGATCAGGTTCAAATGAAGCAAATAAGTTGGTGAAAACACTAAACGACAGTAGCTTGAATTTCAAGTACTCTACACTTGAAAAGGCAACAGGATCTTTTGATGAGGCTAACAAGCTTGGACAAGGAGGATTTGGCACAGTTTATAAGGGCGTTTTGTCGGATGGAAGAGAGATAGCTGTCAAGAGGCTTTTCTTCAATAACAAACACAGGGCAGCTGACTTTTTCAATGAAGTGAACATAATAAGCAGTGTGGAGCACAAAAATTTAGTAAGGTTGCTTGGTTGTAGTTGTTCTGGACCTGAAAGTCTGCTTGTTTATGAGTTCCTTCCTAACAAGAGCCTCGATCGCTTCATTTTCGATCCAAGTAGAGATAGATTACTCAATTGGGAGAAGAGATATGAAATTATCGTAGGAACAGTTGAAGGTTTAGCTTACCTGCATGAGAACTCGAAAATCCGGATCATCCATAGAGACATAAAGGCTAGTAACATCCTGTTAGACTCCAAGCTTCGAACTAAGATTGCTGATTTTGGATTAGCAAGATCCTTCCAAGATGATAAAAGTCACATCAGCACTGCCATTGCTGGAACCTTAGGATATATGGCTCCGGAATACCTAGCTCACGGCCAGCTCACGGAAAAGGCCGATGTATATAGCTTTGGTGTGCTGTTGTTGGAGATCATCACTGGGATGCAGAACAATAGGAGCAAAACCTCAGAATACTTGGAAAGTCTTGTTATAATTACATGGAAGCATTTTCAATCAGGGACAGTGGAAAGGATATATGATCCAAACCTTATGCTTGAAAATGAAGAAAAGAAAGAAGAGGTATTGAGAGTTGTGCATATAGGACTTTTATGCACTCAGGAAATTGCATCATTAAGACCCTCCATGTCAAAGGTACTACAAATGCTGATCAAGAAGGAGGATCAGGAGCAACTTCCACCACCCACCAACCCACCCTTCATGGATGAAAAAACAATGGAACTCAATGACACAAGTGAGGATCCTTCATACCAAAACATCACAGATGCTTCTTCTTCAGCTGCCACTTTCACTCATAGTTCATTTCATCCCAGATAA 1965 41.93 MKTKSPFPSHYVFFLFNIFLLSLETSTMADPRSQTVKIMCGTELEHNTTAFVPNFVGTMQVISEQMRTSGFGVAVVGKGPDTNYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYEEFQGPLDRAVCGNSSIGRRNSIFEQSIKQAVAQAIENAPSNRGYARVQMALPGTVNESVYLLAQCWRNLNRSSCVSCLRNASSSLLRCLPSSEARALNTGCFMRYSNVNFLNAEAISVRSRGTIIAIVISVVSSVAVLIVGVLIGAYIWNQRYIKKKRRSGSNEANKLVKTLNDSSLNFKYSTLEKATGSFDEANKLGQGGFGTVYKGVLSDGREIAVKRLFFNNKHRAADFFNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDPSRDRLLNWEKRYEIIVGTVEGLAYLHENSKIRIIHRDIKASNILLDSKLRTKIADFGLARSFQDDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIITGMQNNRSKTSEYLESLVIITWKHFQSGTVERIYDPNLMLENEEKKEEVLRVVHIGLLCTQEIASLRPSMSKVLQMLIKKEDQEQLPPPTNPPFMDEKTMELNDTSEDPSYQNITDASSSAATFTHSSFHPR 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 241828 244384 - evm.model.ptg000015l.39 HCH4g0039 542283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0039 654 Pfam Salt stress response/antifungal 147 243 IPR002902 -
HCH4g0039 654 Pfam Salt stress response/antifungal 47 132 IPR002902 -
HCH4g0039 654 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
HCH4g0039 654 SUPERFAMILY Protein kinase-like (PK-like) 311 631 IPR011009 -
HCH4g0039 654 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 174 633 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
HCH4g0039 654 MobiDBLite consensus disorder prediction 627 654 - -
HCH4g0039 654 FunFam Cysteine-rich receptor-like protein kinase 2 403 607 - -
HCH4g0039 654 ProSiteProfiles Protein kinase domain profile. 327 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0039 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0039 654 CDD STKc_IRAK 333 601 - -
HCH4g0039 654 Gene3D Phosphorylase Kinase; domain 1 287 402 - -
HCH4g0039 654 FunFam Cysteine-rich receptor-like protein kinase 3 143 246 - -
HCH4g0039 654 FunFam Cysteine-rich receptor-like protein kinase 2 33 134 - -
HCH4g0039 654 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
HCH4g0039 654 Gene3D - 32 134 IPR038408 -
HCH4g0039 654 Gene3D - 143 246 IPR038408 -
HCH4g0039 654 FunFam Putative DUF26-domain receptor-like protein kinase family protein 295 402 - -
HCH4g0039 654 Gene3D Transferase(Phosphotransferase) domain 1 403 610 - -
HCH4g0039 654 ProSiteProfiles Gnk2-homologous domain profile. 141 246 IPR002902 -
HCH4g0039 654 Pfam Protein kinase domain 329 535 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0039 654 MobiDBLite consensus disorder prediction 602 654 - -
HCH4g0039 654 SMART serkin_6 327 601 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1050 HCH-Chr1:58350804 HCH4g0039 HCH-Chr4:241828 2.20E-139 dispersed
HCH3g0350 HCH-Chr3:2243040 HCH4g0039 HCH-Chr4:241828 1.60E-124 dispersed
HCH4g0039 HCH-Chr4:241828 HCH9g0130 HCH-Chr9:723123 6.90E-141 dispersed
HCH4g0038 HCH-Chr4:237869 HCH4g0039 HCH-Chr4:241828 4.60E-254 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81435 PF00069 Pkinase 3.30E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0039 - - - 0.0