Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0040 ATGGCTATGGAAGTAGAAGGCAATGTTACAGAATCAGGATCAAGAAAATTTACTCTTCCAGTAGATTCCGAACACAAATCCACGGAATTCAGATTGTTTTCATTAGCCAAACCCCACATGCGAGCCTTCCACCTTTCTTGGGTTTCTTTCTTTGCATGCTTCGTCTCTAGTTTTGCAGTGCCACCACTTCTTCCTATCATACGCGACAACCTTAACCTCACAGATACCGACATCGGTAATGCCGGTATAGCCTCCGTTTCCGGTGCAGTTTTTGCCAGACTTGCAATGGGTACTGCATGTGACCTCTTTGGACCACGCCTTGCTTCTGCCTTACTCATTCTCCTTACTGCCCCCGCTGTTTACTGCACGTCCCTCGCCTCATCGGCCGTGTCGTTCCTCCTCGTACGATTCTTCACCGGCTTTTCTTTAGCCACTTTTGTCTCAACCCAATTCTGGATGAGTTCCATGTTTTCTTCATCCGTGGTCGGAACCGCCAACGGCGTATCCGGTGGTTGGGGAAATTTAGGAGGTGGCGCCACACAACTTATAATGCCTTACGTATTTTCTATAATTCGGGATATTGGCGCAACCCAATTCACAGCTTGGCGAATAGCCTTTTTTATTCCAGCCTTGTTTCAAACATTATCAGCTTTTGCTGTCTTGATCTTTGGCCAAGATACTCCGGATGGGAACTTCTCGAGCGTGGAAAAAACGGGAGAAAAACATAAAGATGAATTCTCGAAGGTTTTTTGTCATGGAGTTGGAAATTATAGGGGGTGGATTTTGGCTTTAACTTATGGTTATTGTTTTGGGGTTGAATTGACGATTGATAATATAATTGCTAATTACTTTTTTGATAGATTCAATTTGAATATTAGGACGGCAGGGATTGTGGCGGCGAGTTTTGGTTTGGCTAATTTGTTTGCAAGACCATCAGGAGGGTTTTTGTCTGATGCTGTGGGGAAAAGGTATGGTATGAGAGGAAGGTTATGGGCATTGTGGATTGTTCAGACATTAGGGGGTGTTTTTTGCTTGATCCTTGGACTTGTTGGTTCACTTGCTGCTTCTATTGCTGTGATGATTGCTTTCTCTATATTTGTTCAAGCTGCTTGTGGCCTTACTTTTGGCGTGGTTCCTTTCGTCTCAAGAAGGTCATTGGGGGTGATATCTGGTATGACAGGAGGAGGTGGAAATGTGGGTTCAGTAATAACCCAGTTAATTTTCTTTAGAGGATCAAGGTATTCAAAAGAAACAGGGATTTCTCTGATGGGTGTGATGATTATTTGCTGCACTCTTCCTATTTCCTTCATATACTTCCCACAATGGGGTGGGATGTTCTGTGGGCCTTGTTCTAAAAAAACATTCACTGAAGAAGATTATTACATATCAGAATGGAGCCCAGATGAGAAGGACAAAGGGTACCATTTGCAAAGCTTGAAATTTGCCACTAACTGTGCTACTGAGAGAGGAAGAGTTGCCTCTCATCAGACTAACCCTTAA 1500 43.6 MAMEVEGNVTESGSRKFTLPVDSEHKSTEFRLFSLAKPHMRAFHLSWVSFFACFVSSFAVPPLLPIIRDNLNLTDTDIGNAGIASVSGAVFARLAMGTACDLFGPRLASALLILLTAPAVYCTSLASSAVSFLLVRFFTGFSLATFVSTQFWMSSMFSSSVVGTANGVSGGWGNLGGGATQLIMPYVFSIIRDIGATQFTAWRIAFFIPALFQTLSAFAVLIFGQDTPDGNFSSVEKTGEKHKDEFSKVFCHGVGNYRGWILALTYGYCFGVELTIDNIIANYFFDRFNLNIRTAGIVAASFGLANLFARPSGGFLSDAVGKRYGMRGRLWALWIVQTLGGVFCLILGLVGSLAASIAVMIAFSIFVQAACGLTFGVVPFVSRRSLGVISGMTGGGGNVGSVITQLIFFRGSRYSKETGISLMGVMIICCTLPISFIYFPQWGGMFCGPCSKKTFTEEDYYISEWSPDEKDKGYHLQSLKFATNCATERGRVASHQTNP 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 247930 249749 - evm.model.ptg000015l.40 HCH4g0040 542284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0040 499 Gene3D MFS general substrate transporter like domains 35 234 IPR036259 -
HCH4g0040 499 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 13 491 IPR044772 GO:0005886(PANTHER)|GO:0015112(InterPro)|GO:0015112(PANTHER)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
HCH4g0040 499 Gene3D MFS general substrate transporter like domains 245 442 IPR036259 -
HCH4g0040 499 ProSiteProfiles Major facilitator superfamily (MFS) profile. 42 443 IPR020846 GO:0022857(InterPro)
HCH4g0040 499 FunFam High affinity nitrate transporter 2.5 35 231 - -
HCH4g0040 499 CDD MFS_NRT2_like 43 436 IPR044772 GO:0015112(InterPro)
HCH4g0040 499 Pfam Major Facilitator Superfamily 47 403 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
HCH4g0040 499 SUPERFAMILY MFS general substrate transporter 29 437 IPR036259 -
HCH4g0040 499 FunFam Nitrate transporter 2.1 243 444 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1217 HCH-Chr3:44977227 HCH4g0040 HCH-Chr4:247930 6.50E-174 dispersed
HCH3g1219 HCH-Chr3:45054112 HCH4g0040 HCH-Chr4:247930 1.00E-174 dispersed
HCH1g1052 HCH-Chr1:58362827 HCH4g0040 HCH-Chr4:247930 6.10E-230 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0040 K02575 - rcu:8273477 751.125