Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0057 ATGAGTAATGAAGAAACGCGAATGAATGAATCATGTTGTTGCTTGAAACGAAAAAGACCACCCAACATTCTAATCCCAACAACCGCCTTGAAATCTCCCATTTTTGTTCATTCCACGCCTCGTACCGACACCGTCTTTTCCTCTGCAAATGGTGAATTTGCAGATCATGTGGGAGTTTTCTTTGTCAAGGGAAAGAAGAAGTTCATGGAAGATACACACAAGATTATGATTCCTTGCTCAAATGAAGCTTTTTTTGGCGTCTATGATGGGCATGGAGGGAGGAAGGCAGCGAATTTCGTGGCACAAAATTTGCATAAGAATATACTTGAGATGATGGGCAATTGTTGTGCAGATAAGGAAGAAGCAATTAAAGCTGCTTTTTTGAAAACAGACAGAGACTTCTTGAAGCTGGGTATAGGCAGTGGTGCTTGCTGTGTGACAGCTCTGTTACAAGGTGAAGAAGTTGTTGTTTCAAACTTGGGAGATTGCAGATGTGTTCTTTCAAGAGGTGGGGTGGCTGAAGCTTTAACAAAGGACCATAGAGTGGAAAATAAGGACGAAAGAAAAAGAATAGAAAACAAGGGAGGATATGTTGAGTTCCATAGGGGAGCATGGAGGGTTCATGGTGTTCTTTCAGTTTCTAGAAGCATTGGAGATGCTCATTTGAAGGACTGGGTGGTGGCAGAGCCTGATTCAAAGCTTTTCCTTCTTACTCGAGACATGGAATTTCTCGTCCTTGCTTCTGATGGCCTATGGGAAAAGGTTGGCAACCAAGAGACGGTTGACATTGTCACAAGAAGATTGTGCTTGGTGGATAAAAAATTTGAGCAATCAAAAGATTTCTCTATGAATACAAGTCCAAAATTACGGCGAGTTTCATTAGTCAGGCAACAGACGGGGATAATAAGAAAATCTCCAAGCTATATGAAGGAAGTTGATTGCTGGGAAGATGACAATGCTAGTGAAAATGGAAGTCCTAAATCAAAATCAAGAAGAATATCAGTAATCAGACGTGTGAAGATGAAGACAGAATCACCAACTAAGGAGAACAGTGGTTGCTATAGGAGAAGACCCACATCCAATAGACTTGTAGCTGCTTGCAAGGAGCTGGTAGATCTAGCTTTGAGTAGGGGTAGTTTGGATGATATTACTGTAATGATTATTGATTTAACTCACTTTCACTCTAGATGCAACACTCAAAAATAG 1206 40.88 MSNEETRMNESCCCLKRKRPPNILIPTTALKSPIFVHSTPRTDTVFSSANGEFADHVGVFFVKGKKKFMEDTHKIMIPCSNEAFFGVYDGHGGRKAANFVAQNLHKNILEMMGNCCADKEEAIKAAFLKTDRDFLKLGIGSGACCVTALLQGEEVVVSNLGDCRCVLSRGGVAEALTKDHRVENKDERKRIENKGGYVEFHRGAWRVHGVLSVSRSIGDAHLKDWVVAEPDSKLFLLTRDMEFLVLASDGLWEKVGNQETVDIVTRRLCLVDKKFEQSKDFSMNTSPKLRRVSLVRQQTGIIRKSPSYMKEVDCWEDDNASENGSPKSKSRRISVIRRVKMKTESPTKENSGCYRRRPTSNRLVAACKELVDLALSRGSLDDITVMIIDLTHFHSRCNTQK 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 335858 337375 + evm.model.ptg000015l.57 HCH4g0057 542301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0057 401 CDD PP2Cc 56 390 IPR001932 -
HCH4g0057 401 ProSiteProfiles PPM-type phosphatase domain profile. 56 390 IPR001932 -
HCH4g0057 401 PANTHER PROTEIN PHOSPHATASE 51 389 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH4g0057 401 Gene3D - 45 396 IPR036457 -
HCH4g0057 401 SMART PP2C_4 46 388 IPR001932 -
HCH4g0057 401 Pfam Protein phosphatase 2C 58 268 IPR001932 -
HCH4g0057 401 ProSitePatterns PPM-type phosphatase domain signature. 84 92 IPR000222 GO:0043169(InterPro)
HCH4g0057 401 SUPERFAMILY PP2C-like 55 391 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1454 HCH-Chr3:52510969 HCH4g0057 HCH-Chr4:335858 6.30E-57 dispersed
HCH4g0057 HCH-Chr4:335858 HCH4g0520 HCH-Chr4:3411272 1.40E-32 dispersed
HCH4g0057 HCH-Chr4:335858 HCH1g0356 HCH-Chr1:50431583 7.80E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0057 - - - 0.0