Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0059 | ATGTCAAAACCCTGGGGTGGAATCGGAGCCTGGGCCGCCGATGCTGAGCGCGCCGAAGCTGAAGAACGAGAGGAGCAAGCCGCCGCGGCTGCTGCGGCGGCGGCTTCACCAGCTGCATCGAAGAATTTCCCTAGCATTAAGGAAGGTTTGAATTCAAAACCCAAGAAGAAGAAAATGACGTTATCGGAGTTTACGATGGGGACTATCACGGGACCGGGGAATAGGAAAAATGAGTCTCAGGGATTGACTCCTGAAGAGATGCTTAGGCTTCCGACTGGTCCGAAAGATCGGTCTGGTGAGGAAATGCAGTATGGTCGGCTTGGTGGTGGTTTTTCATCCTATGATCGGTCCGGTCCGGCTCGAAATCGGGACCGTGATGAAGGGGATGGGTCTTGGGGTGGTGGAAGGAGATCTTATGGTGGTGGATTTGATGAGGAACGTAGAGGGCCTCCTTCTAGGGTTTCTAATTTTGATCAACCTTCTAGGGCTGATGAGGTTGATAATTGGGCAATGACGAAGAAATCTTCTACATTTGATTCACCTCGACAGAATCGGTACGCCTCCCTTGGTACCGGTGGTGGTGTTGGTATAGGAGGTGTGGCATCTAGGGCTGATGATGTTGATAATTGGGCTAGTGGGAAAAAGCCTATTGCATCGAGATCATCTACATTTGGTTCTGGTTTTCGTGATTCGGTAAATGAGCCTGATCGCTGGAGTAGAGGTCGTGTGCGTGAAAGTGATCAGGAACGACCCCGATTAGTATTGGATCCTCCGAAAGTCGGCGGTGTTGCGAATGAACCGGTCAGGACAAGCAAGTCGAATCCTTTTGGAGCAGCTAGGCCGAGAGAAGAGGTTTTGGCTGAGAAGGGATTGGATTGGAAGAAGCTGGAGTCGGAAATTGAAGCGAAAAAATCAAGTAGGCCGACGAGTGCTCATTCTAGCAGGCCGTCAAGTGCTCAATCGAGTCAGTCTGAGGGTCCTGGATTGCAGGGTATAGAGAACGTGTTGAAGCCGAGGGCAAAGGTTAATCCGTTTGGGGATGCCAAACCTAGGGAAGTTTTGCTGCAGGAACGAGGCAAGGATTGGCGAAAGATTGATATGCAACTGGAGCACCGTGCTCTTGACAGGCCTGAAACGGAACAGGAAAAAATATTGAAAAATGAAATTGATATTTTAAGAAAGGAACTGGAGGAAGGCTTGTCTCTAAAGACTAACAAAGAGGCTGTAGACTCTGCTGGAGACCTACTCAATCTGCGTGAAACAATAAGTAACAAAGAACGTGAACTGGAGATGCTGATCCTTGATTTGGATGATAAAGTTCGCTTTGGGAAGAAAGCTACTGAGAGGCCAGGCTCTGGAGCAGGTAGGGCTGTTGTCTTTCCTGAAAGACCGCCTTCTCAATCTGGATCCTTTGATGAGCCCAGAAGCTTTGAATCTGTGGATAGGCCTCGATCACGTGGCAATGTTGATGTATGGACTGCACCTGCTGATGATAGACGACCATTTCAAGGTGGCAGGGATAGAGGTTTTTTGGGCAACAGAGACATGGAGAGGTCAGGGTCAAGGGATAGATGGTGA | 1578 | 49.37 | MSKPWGGIGAWAADAERAEAEEREEQAAAAAAAAASPAASKNFPSIKEGLNSKPKKKKMTLSEFTMGTITGPGNRKNESQGLTPEEMLRLPTGPKDRSGEEMQYGRLGGGFSSYDRSGPARNRDRDEGDGSWGGGRRSYGGGFDEERRGPPSRVSNFDQPSRADEVDNWAMTKKSSTFDSPRQNRYASLGTGGGVGIGGVASRADDVDNWASGKKPIASRSSTFGSGFRDSVNEPDRWSRGRVRESDQERPRLVLDPPKVGGVANEPVRTSKSNPFGAARPREEVLAEKGLDWKKLESEIEAKKSSRPTSAHSSRPSSAQSSQSEGPGLQGIENVLKPRAKVNPFGDAKPREVLLQERGKDWRKIDMQLEHRALDRPETEQEKILKNEIDILRKELEEGLSLKTNKEAVDSAGDLLNLRETISNKERELEMLILDLDDKVRFGKKATERPGSGAGRAVVFPERPPSQSGSFDEPRSFESVDRPRSRGNVDVWTAPADDRRPFQGGRDRGFLGNRDMERSGSRDRW | 525 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 343842 | 347218 | - | evm.model.ptg000015l.59 | HCH4g0059 | 542303 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0059 | 525 | MobiDBLite | consensus disorder prediction | 445 | 525 | - | - | |
HCH4g0059 | 525 | MobiDBLite | consensus disorder prediction | 500 | 525 | - | - | |
HCH4g0059 | 525 | MobiDBLite | consensus disorder prediction | 309 | 329 | - | - | |
HCH4g0059 | 525 | MobiDBLite | consensus disorder prediction | 63 | 81 | - | - | |
HCH4g0059 | 525 | MobiDBLite | consensus disorder prediction | 118 | 132 | - | - | |
HCH4g0059 | 525 | MobiDBLite | consensus disorder prediction | 1 | 352 | - | - | |
HCH4g0059 | 525 | MobiDBLite | consensus disorder prediction | 215 | 229 | - | - | |
HCH4g0059 | 525 | MobiDBLite | consensus disorder prediction | 282 | 308 | - | - | |
HCH4g0059 | 525 | Coils | Coil | 415 | 435 | - | - | |
HCH4g0059 | 525 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 1 | 447 | IPR010433 | GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER) | |
HCH4g0059 | 525 | MobiDBLite | consensus disorder prediction | 233 | 254 | - | - | |
HCH4g0059 | 525 | MobiDBLite | consensus disorder prediction | 170 | 187 | - | - | |
HCH4g0059 | 525 | Pfam | Plant specific eukaryotic initiation factor 4B | 1 | 509 | IPR010433 | GO:0003743(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0525 | HCH-Chr2:49004725 | HCH4g0059 | HCH-Chr4:343842 | 6.70E-27 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH4g0059 | K03258 | - | csv:101206526 | 718.768 |