Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0072 ATGGAAATTCACATCTTTCTTCTGATACTATTTCCTTTCCTCCTCCAAATAAGCTCCATTTCCTCTTCCCCACTACAAGACCCTGAATTGGTAGTCCAAGAAGTTCTCACGAGCATCAATGTCTCAAGAAGGAACTTGGGCTTCCTTTCTTGTGGGACAGGAAATCCCATCGATGACTGCTGGCGTTGCGACCCTAACTGGGAGAAAAACCGCAAGCGACTCGCTGACTGTGCTATTGGCTTCGGCAAGCGAGCAGTAGGCGGCCGAGATGGCAAGATATATGTAGTCACTGACCCAAGTGACAGCAACGTTGTGACCCCAAAACCTGGCACTCTAAGGCATGCTGTGATCCAAAAGGAGCCATTGTGGATCATCTTCAACCGTGACATGGTGATCAAGTTAAAGGCAGAGCTGATCATGAACTCTTTCAAGACCATTGACGGCCGTGGAGCCAGCGTCCACATTGCCGGTGGACCCTGCATTACTATACAGTTTGTGACCAACATTATCATCCATGGCATAAATATCCATGACTGCAAGCAAGGAGGGAATACTTATGTGAGAGATTCACCAGATCATTATGGATGGAGGACATTGTCTGATGGAGATGGGGTTTCGATTTTTGGTGGAAGCCATGTTTGGATCGATCATTGCTCGTTATCGAATTGTCGTGACGGGTTGATTGATGCTATTCATGGCTCCACAGCCATCACCATCTCCAACAATTACATGACCCACCATAATAAGGTTATGCTTTTAGGCCATAGTGATTCCTATACTCAAGATAAGAACATGCAAGTTACTATAGCTTTCAACCATTTTGGTGAAGGGCTGGTTCAAAGAATGCCCAGATGTAGACATGGGTATTTTCATGTGGTGAATAATGACTACACTCATTGGCTAATGTATGCAATTGGTGGGAGTGCATCTCCTACTATCAACAGCCAAGGGAATAGGTACCTTGCTCCCAATGACAATGACATCAAAGAGGTTACAAAACATGAGGATGCACCTCAGAGCCAGTGGAAGAACTGGAATTGGAGATCAGAAGGAGATTTATTGTTAAATGGGGCATTCTTTACAAGGTCTGGTGCTGGATCATCTTCCAGTTACGCCAGGGCATCGAGCTTAAGTGCCAAGTCATCGTCTCTCGTGAGCTCGATGACGGCAGGATCAGGCGCGCTGAGATGCAGAAAGGGCTCTAGGTGCTAG 1212 46.29 MEIHIFLLILFPFLLQISSISSSPLQDPELVVQEVLTSINVSRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAVGGRDGKIYVVTDPSDSNVVTPKPGTLRHAVIQKEPLWIIFNRDMVIKLKAELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPDHYGWRTLSDGDGVSIFGGSHVWIDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWLMYAIGGSASPTINSQGNRYLAPNDNDIKEVTKHEDAPQSQWKNWNWRSEGDLLLNGAFFTRSGAGSSSSYARASSLSAKSSSLVSSMTAGSGALRCRKGSRC 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 395562 397047 - evm.model.ptg000015l.72 HCH4g0072 542316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0072 403 Pfam Pectate lyase 140 318 IPR002022 -
HCH4g0072 403 SUPERFAMILY Pectin lyase-like 40 397 IPR011050 -
HCH4g0072 403 Gene3D - 54 396 IPR012334 -
HCH4g0072 403 PANTHER PECTATE LYASE 18-RELATED 15 400 IPR045032 GO:0030570(InterPro)
HCH4g0072 403 SMART amb_all 129 326 IPR002022 -
HCH4g0072 403 FunFam Pectate lyase 54 396 - -
HCH4g0072 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
HCH4g0072 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
HCH4g0072 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
HCH4g0072 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
HCH4g0072 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
HCH4g0072 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
HCH4g0072 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
HCH4g0072 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0952 HCH-Chr1:57750682 HCH4g0072 HCH-Chr4:395562 9.80E-136 dispersed
HCH3g0520 HCH-Chr3:3431045 HCH4g0072 HCH-Chr4:395562 4.30E-119 dispersed
HCH4g0072 HCH-Chr4:395562 HCH7g1401 HCH-Chr7:46751094 7.10E-173 dispersed
HCH3g0395 HCH-Chr3:2574366 HCH4g0072 HCH-Chr4:395562 3.30E-181 transposed
HCH13g0895 HCH-Chr13:10187138 HCH4g0072 HCH-Chr4:395562 1.20E-188 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0072 K01728 - csv:101208076 702.975