Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0073 ATGGTTTCTTTATTACCACACCGCTCAAATTTCGTATTCTCTCCATTTCCTAACCGTATTCCAATTCCGAATCCTCTCTTTCATGGAATCCAATTCCGTGAATTCTCCCACTCCAAGCCTTTCCTTCGCGGTTCCTTCTCTCTTACTAGATTCGGGTTCAAGCCCGGTTTCTTTCCTGACCCGGATAATGCTGAGGGCCTTGTTAGTGAGTTGTTTGGTAAAGCTGAGAATTTTCTTTACACGATTGCTGACGCCGCCGTGTCGGCCTCCCCGGATAATGTTACCACCACTGCCAAACAGACTGATGATTGGTTTTCTGGAATTACTAATTATATGGAAAGCGTGCTGAAAATTCTAAAAGATGGACTCTCTGCGTTACATGTTCCTTATGCCTATGGTTTTGCTATTATACTTCTTACAGTTCTTGTTAAAGCTGCAACTTTTCCTTTGACTAAGAAACAGGTAGAGTCTGCAATGGCGATGCGATCTTTGCAACCTCAAATAAAGGCTATTCAACAACGCTATGCCGGGGATCAGGAGAGGATTCAGCTTGAAACTGCTCGACTCTACAAATTAGCTGGCATAAACCCTCTGGCAGGATGCCTACCCACATTGGCGACAATTCCTGTATGGATTGGACTATACAGAGCCCTTTCAAACGTGGCTAACGAGGGTCTCCTCACAGAAGGTTTTTTCTGGATACCCTCTCTGGCTGGTCCAACTACAATTGCTTCTCGGCAAAATGGCAGTGGTATCTCTTGGCTCTTTCCATTTGTGGATGGTCGTCCACCACTTGGATGGTCAGATACCTTCGCTTATCTTGTATTGCCTTTATTGCTGATTGTCTCACAGTATGTCTCTGTTCGGATTATGCAGTCATCACAGAGCAATGATCCAAGCACGAAGAGTTCTCAAGTCTTAACAAACTTCCTACCATTAATGATTGGTTATTTTGCTCTTTCAGTTCCTTCTGGTCTAAGCCTTTATTGGTTTACCAATAACATCTTGAGCACAGCTCAGCAAGCCTGGCTTCAAAAGTTAGGGGGTGCAAAAAACCCAGTTAAACAGTTCAGTGATGAAATTATCAAACAAGACCAGGTACCTGAGTTAAACTCAAGCAAAACAGAACCCAGACAAGTGGAGAAACTGACAGCAGAAGGGCCACGTCCCGGTGACAGATTTAAACAGATAAAGGAGCAAGAGGTAAGAAGAAGACAACAAAGAGAAGAAGAAAAAAGGAAAGCTGAAGAGGAAGCTAAGCTAGGGTATCAAGCACTAAATGAAAGTGAAGCAAATAAATTACATGAGAGAGAAAATACGGGTGAAATTGATGATGACAAGAGTGACAAACTCCAGTCAGAAACTAGTAGCAAATCTATGACCGTCGAAGTTGTAGTCAATGGTACTCTATCTAGACAGGACGAGGAGGAAAGCCAAAACTCCACATCCATGTCCATGCAAAGAACTGATGTGAATGTTGAGGTAGATGGTACAAATGAGCAGCTGCCTAGTGCAACTCTGGAAGAGGAAGTGGTTGAGACATACGCCAGTTCCACCAAGGATACCAAATTAAATGGAGAGGACCCTCATCAAGCCCAAAGAGAGTAA 1608 43.41 MVSLLPHRSNFVFSPFPNRIPIPNPLFHGIQFREFSHSKPFLRGSFSLTRFGFKPGFFPDPDNAEGLVSELFGKAENFLYTIADAAVSASPDNVTTTAKQTDDWFSGITNYMESVLKILKDGLSALHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQIKAIQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGRPPLGWSDTFAYLVLPLLLIVSQYVSVRIMQSSQSNDPSTKSSQVLTNFLPLMIGYFALSVPSGLSLYWFTNNILSTAQQAWLQKLGGAKNPVKQFSDEIIKQDQVPELNSSKTEPRQVEKLTAEGPRPGDRFKQIKEQEVRRRQQREEEKRKAEEEAKLGYQALNESEANKLHERENTGEIDDDKSDKLQSETSSKSMTVEVVVNGTLSRQDEEESQNSTSMSMQRTDVNVEVDGTNEQLPSATLEEEVVETYASSTKDTKLNGEDPHQAQRE 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 403036 407155 - evm.model.ptg000015l.73 HCH4g0073 542317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0073 535 MobiDBLite consensus disorder prediction 365 535 - -
HCH4g0073 535 PANTHER OXA1 30 409 IPR001708 GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(PANTHER)|GO:0032977(InterPro)|GO:0051205(PANTHER)|GO:0072598(PANTHER)
HCH4g0073 535 Pfam 60Kd inner membrane protein 132 346 IPR028055 -
HCH4g0073 535 MobiDBLite consensus disorder prediction 375 423 - -
HCH4g0073 535 MobiDBLite consensus disorder prediction 430 453 - -
HCH4g0073 535 NCBIfam membrane protein insertase YidC 132 346 IPR028055 -
HCH4g0073 535 Coils Coil 397 419 - -
HCH4g0073 535 CDD 5TM_YidC_Alb3 133 346 IPR047196 -
HCH4g0073 535 MobiDBLite consensus disorder prediction 454 522 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1344 HCH-Chr3:51120969 HCH4g0073 HCH-Chr4:403036 1.20E-120 dispersed
HCH4g0073 HCH-Chr4:403036 HCH6g1266 HCH-Chr6:46967942 1.40E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0073 K03217 - csv:101205346 715.301