Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0079 ATGGAAAATGGTTTCTCTTCTCCTCGAAATGAAGCTTTCCCTGTTGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGTTGAAAATTCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACAAGTTGTTTGGCTAGAGAGGCTCTGAGCTTGCTCAGGGAGAGGAAAGACGGATATGATATCGTAATCAGTGATGTCAACATGCCTGATATGGATGGTTTTAAACTTCTTGAGCATGTGGGGCTGGAAATGGATCTGCCAGTTATCATGATGTCAGTTGATGGAGAAACGAGTAGAGTGATGAAAGGGGTTCAACACGGAGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCACGTATTGCGAAAGAAAATACAAGAGGGAAGAGATATTGAAGCCCATGAATGTATTGAAGGCATCCAAATCCTAAGAAATGGATCTGATAGATATGATGATAGCCAGTTCCTCAGAGAAGAACTATTTTCAGTAAGGAAAAGAAAAGATGTTGATAAGCATGAGGACAAAGATTTTGGTGACCCTTCTTCCACAAAGAAAGCTAGAGTGGTTTGGTCTGTTGATCTTCATCAGAAATTTGTAAAAGCAGTAAATCAGATAGGATTTGACAAAGTTGGCCCTAAGAAAATACTTGATCTGATGAATGTACCATGGTTGACTAGGGAAAATGTAGCTAGCCACTTGCAGAAATACCGCCTCTATTTGAGTAGGCTGCAGAAAGAAAATGATCCAAAATCTTGCTTTGTTATTGGGATGAAACATCCTGATTTGACTTCAAAGGATGCAGATGGAAACTTTAGCCTTTGTAGCTCAATGAATGTGCACCAAAATGATGCCACAAATAGCAGCTTTGGTTTTTCGGGCGATAACTTCCTTCTTCAGAATGTAGAGTCCAGAGGCCGTGAAGGTGATCTTAAAAGGATTGTTCCAGAGCCTACATCAAAAGCTGCCAGTAGGAGTGTTCCTGAACCGATAAAGTCAAGGAGTATGGAAACGAAACTCAACAATTCTTTTGCCTCTGTTGAGTCTGAAGTAAAGTTTGCAGCATTTGATCATAATCACCAAACACATTACCCTTGGGTTGAAGCTTCAGAAATACAATTCAAACAAGAAAGCAAGCCACTTATGCATTTAGAAAGTGATTTCAACCAGTTTCCACCAAAAATTCCATCACATAAAGTCCAAATTGATCAACTCCCATCGATTTCATCCATTAGTTCCGGACTGTCAGCAACTGAGAAAGATATAGCAGGCTCCATTGAAAGCAAGCCTCCATATTCAGAGGGCTGTAGCCAACAAATCATCCATTTAAATCTACCAAAACCTCCAGATTCATTTACTTCCAAGGCTAAGAGTTTTAGTGAAATGAATGACCATTTTGATCCTATTTCAACAACACCTGTTGGCATGAAAAACCAGAATTTTAATCTGAGCTGCATTTCTGATTTGGGAGGTGGGTTGCCTTTTGGAACCTTGGATGAAGACTTGCAAGGTTATTTGCTTCAAGATGGTTGTTATCCGAAGCATCTTGAACATCAGAGTATGGACTTTCCAGATTACACTGATCCGGGTATCTTCACTGAAGTTCCTAATCACCTTTATGATGCACTGAAGTTTGGTGGCTATGAGTACGCCTACGACCCAACCGAATATCCAGTGATAGATGAAGGCCTGTTCATAGCATGA 1737 40.18 MENGFSSPRNEAFPVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTSCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEAHECIEGIQILRNGSDRYDDSQFLREELFSVRKRKDVDKHEDKDFGDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKSCFVIGMKHPDLTSKDADGNFSLCSSMNVHQNDATNSSFGFSGDNFLLQNVESRGREGDLKRIVPEPTSKAASRSVPEPIKSRSMETKLNNSFASVESEVKFAAFDHNHQTHYPWVEASEIQFKQESKPLMHLESDFNQFPPKIPSHKVQIDQLPSISSISSGLSATEKDIAGSIESKPPYSEGCSQQIIHLNLPKPPDSFTSKAKSFSEMNDHFDPISTTPVGMKNQNFNLSCISDLGGGLPFGTLDEDLQGYLLQDGCYPKHLEHQSMDFPDYTDPGIFTEVPNHLYDALKFGGYEYAYDPTEYPVIDEGLFIA 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 431322 434049 + evm.model.ptg000015l.79 HCH4g0079 542323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0079 578 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 329 IPR045279 GO:0009736(InterPro)
HCH4g0079 578 Gene3D - 17 183 - -
HCH4g0079 578 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
HCH4g0079 578 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
HCH4g0079 578 FunFam Two-component response regulator 193 256 - -
HCH4g0079 578 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160(InterPro)
HCH4g0079 578 CDD REC_typeB_ARR-like 19 133 - -
HCH4g0079 578 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
HCH4g0079 578 SUPERFAMILY Homeodomain-like 195 254 IPR009057 -
HCH4g0079 578 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677(InterPro)
HCH4g0079 578 SUPERFAMILY CheY-like 16 141 IPR011006 -
HCH4g0079 578 Gene3D - 193 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0079 HCH-Chr4:431322 HCH7g1048 HCH-Chr7:42435263 1.90E-78 dispersed
HCH1g1114 HCH-Chr1:58745098 HCH4g0079 HCH-Chr4:431322 1.40E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33395 PF00072 Response_reg 4.00E-24 CL0304 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0079 K14491 - csv:101204370 915.605