Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0089 ATGTATTTATCCGATAAGCCTCACCCAATTGATTTCTACAAAGAAGAAACTACCAGAGATATGATAATTGAAGTTTCCTCCCCCGCAGCCGATCACCATCTCCCGCCGCCACCGCCACCGTCGCAACTGATGCTTGGAGACAGCAGTGGAGAGGATCACGAAATCAAAGCTCCAAAGAAACGAGCAGAAACATGGGTTCAAGACGAGACTAGAAGCTTAATTTGTCTACGCCGAGAAATGGATGGATTATTCAATACTTCGAAATCCAATAAGCATTTATGGGAACAGATTTCTGTTAAAATGAGGGGAAAAGGGTTTGATCGTTCACCGACTATGTGTACGGATAAATGGAGGAATTTGCTCAAGGAGTTTAAGAAAGCTAAGCATCATCATGATCGGGGAAGTGGGTCTGCGAAAATGTTGTGTTATAAGGAAATTGAAGAGATTTTGAAAGAGAGAAGTAAGATTTCTCAGTATAAGAGCCATACACCTCCCAAAATTGATTCTTATTTGCAATTCGCAGAGAAAGGACTTGAGGATAATGGTATTTCGTTTGGACCGGTTGAAGCCAGCGGTAGGCCATCACTCAATCTCGAAAGACGTCTAGATCATGATGGAAATTCTCTTGCAATCACAGCAGCTGATGCAGTTACAGCAAGTGGCATTCCACCTTGGAATTGGAGAGAGGCCCCTGGAAATGGTGAGGATAGTCAGGCATTTGGTGGGAGAGTCATATCAGTCAAGTGGGGGGATTATTCAAGAAGAATTGGCATCGATGGCACCTCAGATGCCATCAAGGAGGCAATCAAGTCTGCTTTTAGGCTGAGAACTAAACGTGCATTTTGGTTAGAGGATGAAGACCAGGTTGTTCGAAGTCTAGACAGGGACATGCCTCTCGGGAATTACACTCTTCACCTCGATGAAGGGTTGGCTGTTAAAATCTGCCTTTATGATGAATCTGACCACTTACCAGTCCATACTGAAGATAAAAATTTTTACGTTGAAGATGATTACCGGGATTTTCTAGCTCGTAGGGGCTGGACATGCCTTCGGGAGTTTGATGGGTACAGAAACATTGATAATATGGATGATCTTCGTCCTGGTGGAATATACCGTGGTGTAAGTTGA 1128 43.62 MYLSDKPHPIDFYKEETTRDMIIEVSSPAADHHLPPPPPPSQLMLGDSSGEDHEIKAPKKRAETWVQDETRSLICLRREMDGLFNTSKSNKHLWEQISVKMRGKGFDRSPTMCTDKWRNLLKEFKKAKHHHDRGSGSAKMLCYKEIEEILKERSKISQYKSHTPPKIDSYLQFAEKGLEDNGISFGPVEASGRPSLNLERRLDHDGNSLAITAADAVTASGIPPWNWREAPGNGEDSQAFGGRVISVKWGDYSRRIGIDGTSDAIKEAIKSAFRLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGLAVKICLYDESDHLPVHTEDKNFYVEDDYRDFLARRGWTCLREFDGYRNIDNMDDLRPGGIYRGVS 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 484869 488061 + evm.model.ptg000015l.89 HCH4g0089 542333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0089 375 PANTHER FI21293P1 42 366 - -
HCH4g0089 375 MobiDBLite consensus disorder prediction 28 61 - -
HCH4g0089 375 SMART sant 61 123 IPR001005 -
HCH4g0089 375 Gene3D - 65 127 - -
HCH4g0089 375 ProSiteProfiles Myb-like domain profile. 57 121 IPR001005 -
HCH4g0089 375 FunFam trihelix transcription factor GT-1 65 127 - -
HCH4g0089 375 CDD GT1 63 128 - -
HCH4g0089 375 Pfam Myb/SANT-like DNA-binding domain 64 149 IPR044822 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0906 HCH-Chr13:10625091 HCH4g0089 HCH-Chr4:484869 2.20E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33396 PF13837 Myb_DNA-bind_4 1.70E-17 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0089 - - - 0.0