Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0103 ATGGATGTATCTGAGGTTGAAGAAAATTTATTTGCTGCAAGTGATGCCAAGTTACATGGAGGAATGTGCAAGACTCTTTCTGCAATGTATTGTAAAGTATTATCAATTTTCCCTGAGTTAGAAGCTGCACGACCTCGGAGCAAATCTGGTATTCAGGCCTTATGTTCATTGCATGTAGCACTTGAAAAGGCCAAGAATGTTCTTCAACATTGCTCAGAAAGCAGCAAACTGTACTTGGCTATAACAGGGGACTCTGTTCTGTCCAAATTTGAGAAGGTTAAATGTGTTCTCCAAGATAGTCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGCGATCAGATTCAGGAGATTATGAAGGAAGTGGAGAGTACACAATTTTGCCTCGATCCCTTGGAGAAGCAAGTTGGTGATGATATTATTTTACTGCTCCAACAGGGACGAAAATTCAGCAACATTATTGACAACGATGAGCTTGAGTCTTTTCACCAAGCTGCTTCTAAACTTGGAATAAACTCCTCAAGAGCAGCCCTTACCGAGAGAAGAGCACTAAAAAAACTCATTGAACGATCTCGCACTGAAGAAGACAAGAGAAAGGAATCCATCGTGGCATATCTTTTGCATCTCATGAGAAAATACTCCAAGTTATTTAGAAGTGAGTTGTCAGATGATAACGATTCACAGGGTTCTGGACCTTGTTCACCCACAGTTCAGAGCTATCTGGAGGATGGCGTGTCTTGTGGAAATAGTCAAATCTTTGAAAGGCAGCTAACAAAGCTGCGTTCCTTTACGTTCAAGCCAAAAAGGAGATCAGATCAGATCGCCCTTCCACCTGACGAGTTAAGGTGTCCAATATCACTGCAGCTTATGTATGATCCAGTCATTATTTCTTCAGGACAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAGTGATGGGCATAACACCTGCCCAAAAACTCAACAAAAACTATCCCATCTTTATCTGACACCAAATTACTGTGTTAAGGGCCTCATCGCTAATTGGTGTGAACAGAATGGAGTCTCTGTCCCTGATGGGCCCCCAGATAGTCTTGACCTCAATTATTGGAGGCTTGTGTTATCTGAGTCTGAGTCTCTGGAATTGCAATCTTTGGACAGTGTTGCTTCTTGTAAGTTGAAAGGTGTTAAAGTCGTTCCTTTAGAAGAGAATGGTATAACTGAGGAGACCAAAGGAAATGTGGATGATAACACTGCTGAGGATACAGAGTATGATATAAATACGATCACTAGATATGAAAATTTGTTGACAATTTTGAATGAAGGAGAAGACCTAAGAACAAAGTCCAAGGTGGTGGAGCAAATAAGGCTGTTACTCAAAGATGATGAAGATGCGAGGATTTTTATGGGAGCTAATGGATTCATTCAAGGACTTCTACACTATTTAGAGATAGCTGTAAAAGAAGGAAATGCCAAGGCTCAGGAAAGTGGAGCCATGGCTCTTTTCAACCTTGCTGTTAACAACAATAGAAACAAAGAAATGATGCTGGAAGCCGGGATGATTTCATTGTTGGAGGAAATGATTATGAACACAAATTCTCATGGATATGCAACTGCCCTCTATCTGAACATCTCCTGCCTAGAAGAATCTAAAACAATTATTGGCTCAAGTTGTGCGGTTCCTTTCTTGACTCAGCTCCTTGATGCTAATACTGAAAAAATATGCAAGCTCGACGCCCTTCATACACTTTACAATCTCTCAACAGTACCCTCCAATATTCCAAACCTGCTTTCTGCTGGGACTATCAGGGGTGTTCAATCCCTTCTAGGAGCCTGCGCCGATCCCACGTGGACTGAAAAGTGCATTGCTGTCCTGATAAATCTGGCTTCTAATCAATCAGGTAGAGATCAAGTATCAACTACACCAGGACTTGTTGGTGTGTTGGCAACAATATTAGACAGTGGTGAACCCATTGAGCAGGAGCAAGCAGTAGCATGTCTCTTGATTCTCTGCAATGGGAATGAAAAGTGCAGTGAGATGGTCCTACAGGAGGGCGTAATTCCGGGGCTGGTGTCGATATCTGTGAACGGGACAGTGAGGGGCAAGGAGAAGGCTCAAAAACTTCTCATGTTATTCAGGGAGCAAAGACAACGAGAGCAACCCCCACCAATTGAACGGCCAGAGAGTAGCGAAAAAGCGACGTCTACTACCCCTGCAACCGAATCAAAGCCACTCTGCAAGTCAATTTCTAGAAGGAAAACGGGGAAAGCTCTTAGTTTTCTATGGAAAAGCAAAAGCTATTCAGTGTACCAGTGTTAA 2304 42.14 MDVSEVEENLFAASDAKLHGGMCKTLSAMYCKVLSIFPELEAARPRSKSGIQALCSLHVALEKAKNVLQHCSESSKLYLAITGDSVLSKFEKVKCVLQDSLKRVEDIVPQSIGDQIQEIMKEVESTQFCLDPLEKQVGDDIILLLQQGRKFSNIIDNDELESFHQAASKLGINSSRAALTERRALKKLIERSRTEEDKRKESIVAYLLHLMRKYSKLFRSELSDDNDSQGSGPCSPTVQSYLEDGVSCGNSQIFERQLTKLRSFTFKPKRRSDQIALPPDELRCPISLQLMYDPVIISSGQTYERICIEKWLSDGHNTCPKTQQKLSHLYLTPNYCVKGLIANWCEQNGVSVPDGPPDSLDLNYWRLVLSESESLELQSLDSVASCKLKGVKVVPLEENGITEETKGNVDDNTAEDTEYDINTITRYENLLTILNEGEDLRTKSKVVEQIRLLLKDDEDARIFMGANGFIQGLLHYLEIAVKEGNAKAQESGAMALFNLAVNNNRNKEMMLEAGMISLLEEMIMNTNSHGYATALYLNISCLEESKTIIGSSCAVPFLTQLLDANTEKICKLDALHTLYNLSTVPSNIPNLLSAGTIRGVQSLLGACADPTWTEKCIAVLINLASNQSGRDQVSTTPGLVGVLATILDSGEPIEQEQAVACLLILCNGNEKCSEMVLQEGVIPGLVSISVNGTVRGKEKAQKLLMLFREQRQREQPPPIERPESSEKATSTTPATESKPLCKSISRRKTGKALSFLWKSKSYSVYQC 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 549611 553445 - evm.model.ptg000015l.103 HCH4g0103 542347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0103 767 Gene3D - 417 721 IPR011989 -
HCH4g0103 767 SMART Ubox_2 281 344 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0103 767 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0103 767 PANTHER U BOX DOMAIN-CONTAINING 22 712 - -
HCH4g0103 767 FunFam RING-type E3 ubiquitin transferase 277 351 - -
HCH4g0103 767 SUPERFAMILY ARM repeat 427 709 IPR016024 -
HCH4g0103 767 SUPERFAMILY RING/U-box 274 354 - -
HCH4g0103 767 SMART arm_5 503 541 IPR000225 GO:0005515(InterPro)
HCH4g0103 767 SMART arm_5 542 583 IPR000225 GO:0005515(InterPro)
HCH4g0103 767 SMART arm_5 457 501 IPR000225 GO:0005515(InterPro)
HCH4g0103 767 Gene3D - 10 105 IPR036537 GO:0007166(InterPro)
HCH4g0103 767 Pfam U-box domain 279 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH4g0103 767 MobiDBLite consensus disorder prediction 724 739 - -
HCH4g0103 767 MobiDBLite consensus disorder prediction 710 741 - -
HCH4g0103 767 CDD RING-Ubox_PUB 279 331 IPR045210 -
HCH4g0103 767 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 351 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0103 HCH-Chr4:549611 HCH9g0828 HCH-Chr9:5823482 8.00E-32 dispersed
HCH10g1005 HCH-Chr10:27496265 HCH4g0103 HCH-Chr4:549611 5.90E-12 transposed
HCH2g0646 HCH-Chr2:50253903 HCH4g0103 HCH-Chr4:549611 2.40E-18 transposed
HCH1g1136 HCH-Chr1:58839570 HCH4g0103 HCH-Chr4:549611 5.30E-286 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0103 - - - 0.0