Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0122 ATGGACGACGGAGGAGCTTCTCAGGCGGACGACACCGTCATGTCGGAGGCTGCATCTATTCCGCCGCCGCAACCGACGCCGCAGTCCATAGGGATGGAAAATATTCCGGCAACTTTAAGCCATGGAGGAAGATTTATTCAATATAATATATTTGGTAATATCTTCGAAGTTACAGCAAAGTATAAACCTCCAATTATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGTTCGGCTTTGAATTCGGAGACGAACGAACACGTGGCGATCAAGAAGATTGCAAATGCGTTTGACAATAAGATCGATGCGAAGAGAACTCTTCGTGAGATCAAGCTTCTTCGGCATATGGATCATGAAAACGTTGTTGCAATAAGGGATATCATACCCCCACCTCAGAGGGAAATATTTAATGATGTTTATATAGCATATGAGCTAATGGATACTGACCTTCATCAAATAATTCGCTCGAACCAAGGATTATCGGAGGAGCATTGTCAGTATTTCCTGTACCAGATTCTCCGTGGATTGAAGTACATACACTCAGCAAATGTTCTGCACAGAGATTTGAAGCCTTCCAATCTGCTATTAAATGCTAACTGTGACTTGAAAATATGTGATTTTGGACTTGCTCGTGTTACTTCAGAAACTGATTTTATGACCGAATATGTGGTTACAAGATGGTATCGTGCACCAGAGCTACTACTGAACTCATCAGATTATACCGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCTTTATTTCCTGGTAGAGATCATGTACATCAGTTGCGCTTGCTTTTGGAGCTGATCGGGACCCCATCAGAAGCTGATCTTGGCTTTCTGAATGAGAATGCTAAAAGATATATACGGCAACTTCCGCTTTACCATCGCCAGTCATTCACTGAAAAGTTTCCCCTTGTCCATCCTGCAGCCATTGATCTGGTAGAGAAAATGTTAACATTTGATCCTAGACAGAGAATCACTGTTGAAGATGCGCTAGCTCATCCTTATTTGACTTCATTACACGACATCAGCGACGAGCCCGTTTGCACGACACCTTTCAGCTTCGACTTCGAGCAGCATGCGCTTACGGAGGAACAGATGAAAGAGCTGATCTACAGAGAGGCGCTTGCGTTTAACCCGGAGTATCAGCAGCAATAA 1188 43.77 MDDGGASQADDTVMSEAASIPPPQPTPQSIGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPQREIFNDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPLYHRQSFTEKFPLVHPAAIDLVEKMLTFDPRQRITVEDALAHPYLTSLHDISDEPVCTTPFSFDFEQHALTEEQMKELIYREALAFNPEYQQQ 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 668730 675263 + evm.model.ptg000015l.122 HCH4g0122 542366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0122 395 Gene3D Transferase(Phosphotransferase) domain 1 146 374 - -
HCH4g0122 395 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 55 385 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
HCH4g0122 395 FunFam Mitogen-activated protein kinase 47 156 - -
HCH4g0122 395 ProSiteProfiles Protein kinase domain profile. 62 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0122 395 MobiDBLite consensus disorder prediction 1 34 - -
HCH4g0122 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0122 395 SMART serkin_6 62 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0122 395 ProSitePatterns MAP kinase signature. 97 200 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0122 395 CDD STKc_TEY_MAPK 55 390 - -
HCH4g0122 395 ProSitePatterns Protein kinases ATP-binding region signature. 68 92 IPR017441 GO:0005524(InterPro)
HCH4g0122 395 Pfam Protein kinase domain 67 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0122 395 SUPERFAMILY Protein kinase-like (PK-like) 67 355 IPR011009 -
HCH4g0122 395 Gene3D Phosphorylase Kinase; domain 1 45 384 - -
HCH4g0122 395 FunFam Mitogen-activated protein kinase 146 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1112 HCH-Chr13:36576240 HCH4g0122 HCH-Chr4:668730 8.60E-157 dispersed
HCH4g0122 HCH-Chr4:668730 HCH5g0539 HCH-Chr5:3699647 7.30E-162 dispersed
HCH13g1391 HCH-Chr13:41826303 HCH4g0122 HCH-Chr4:668730 1.20E-115 transposed
HCH3g1283 HCH-Chr3:48738991 HCH4g0122 HCH-Chr4:668730 6.40E-168 transposed
HCH3g0083 HCH-Chr3:478617 HCH4g0122 HCH-Chr4:668730 2.00E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81437 PF00069 Pkinase 2.90E-73 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0122 K14512 - csv:101204301 751.51