Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0156 ATGCCAAGCATTTCGGCCCTTCATTCGATTCAAGAAATCTCCCAGCACCGTTCCAACGATGACTGTTGGATTCTTATCGATGGCAAGGTATACGACTTGACCCCATATTTGGATGAGCATCCTGGTGGAGATGATATCATTCTTGCTGCAACAGGCAGAGATGCCACAGAGGATTTTGAAGACGCCGGTCATAGCAAAGATGCGAGAGAGCTGATGGAGAAATTCTATATCGGTGTGCTTGATGGTACATCGTCCTCAGCTAGCCCGGAACTTGAATCTTCCACCGAAAATTGGATAATTGATTTAGCAGCTCAGTTTCAGGAGTTGGCAAAGCAATACTGGACAGTTCCTGTTGCAGTAATTGGTATTTCTGTGATATTTATCATTTTTGTAAAATTTTCAGCCATTGATTGGGGGGCATTGAGGAGAATTTTAGATTCTCTTGGACAGTTGGTCTTGTTGAGAAGATATGATGGGAATAAAATTAGAAAGAAAAAAAAGAGTTTTATTTTAAATTGTGTTCAAAAAAACACATTATATGTGGGTGGTTTAGCAGAGGAAGTAAACGAATCGATTCTTCACGCAGCGTTCATTCCATTCGGAGATATAAAAGATGTGAAAACTCCATTGGATCAAGCAACTCAAAAACACCGTTCATTTGGCTTCGTAACGTTCTTGGAAAAGGAAGATGCTTCCGCAGCCATGGATAATATGGACGGAGCTGAGCTATACGGCCGTGTTCTAACTGTCAATTACGCTCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCCGCTCAGCCTATTTGGGCGGATGCGGATACATGGTTTGAAAGACAGCAACAAGAGGAGGAAATGCAACGCATTCAGGCCGAGAATCAAGCAACTATGCAGGCCGCTGAGGAGTTGCATAGGAAGAAACTAGCCCAGGAGCGTGAAGGGGAAAAAGATGATGAGATAGAAACCAAGGAGGATCCTATGGCTAAGGCTGAAGCTGAGGTTTTAAGACAAAACAGTTGA 1023 43.5 MPSISALHSIQEISQHRSNDDCWILIDGKVYDLTPYLDEHPGGDDIILAATGRDATEDFEDAGHSKDARELMEKFYIGVLDGTSSSASPELESSTENWIIDLAAQFQELAKQYWTVPVAVIGISVIFIIFVKFSAIDWGALRRILDSLGQLVLLRRYDGNKIRKKKKSFILNCVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENQATMQAAEELHRKKLAQEREGEKDDEIETKEDPMAKAEAEVLRQNS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 866807 871910 + evm.model.ptg000015l.156 HCH4g0156 542400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0156 340 Coils Coil 280 307 - -
HCH4g0156 340 SMART Cyt_b5_2 8 81 IPR001199 -
HCH4g0156 340 MobiDBLite consensus disorder prediction 292 340 - -
HCH4g0156 340 FunFam Cytochrome b5 type B 3 85 - -
HCH4g0156 340 Gene3D - 6 90 IPR036400 -
HCH4g0156 340 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
HCH4g0156 340 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 81 IPR001199 -
HCH4g0156 340 CDD RRM_PPIE 179 253 IPR034168 GO:0003723(InterPro)
HCH4g0156 340 SMART rrm1_1 178 251 IPR000504 GO:0003723(InterPro)
HCH4g0156 340 SUPERFAMILY RNA-binding domain, RBD 175 264 IPR035979 GO:0003676(InterPro)
HCH4g0156 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 255 IPR000504 GO:0003723(InterPro)
HCH4g0156 340 MobiDBLite consensus disorder prediction 300 332 - -
HCH4g0156 340 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 96 IPR036400 -
HCH4g0156 340 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
HCH4g0156 340 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
HCH4g0156 340 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
HCH4g0156 340 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
HCH4g0156 340 Pfam RNA recognition motif 179 248 IPR000504 GO:0003723(InterPro)
HCH4g0156 340 Gene3D - 158 309 IPR012677 -
HCH4g0156 340 FunFam Peptidyl-prolyl cis-trans isomerase 170 322 - -
HCH4g0156 340 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
HCH4g0156 340 PANTHER ATPASE E1 174 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0156 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0156 HCH-Chr4:866807 HCH5g0902 HCH-Chr5:7492597 3.20E-25 dispersed
HCH2g1029 HCH-Chr2:53467641 HCH4g0156 HCH-Chr4:866807 8.30E-08 transposed
HCH3g0114 HCH-Chr3:741297 HCH4g0156 HCH-Chr4:866807 2.80E-13 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH5g0902 . 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-57 218.4
HCH7g1423 . 1 133 NADPH P450 reductases AT5G53560 66.9 7.5e-50 193.4
HCH5g0187 . 1 134 NADPH P450 reductases AT5G53560 61.2 1.1e-45 179.5
HCH7g1737 . 1 136 NADPH P450 reductases AT5G53560 57.4 5.4e-40 160.6
HCH7g1423 . 1 133 NADPH P450 reductases AT5G48810 66.7 6.0e-50 193.7
HCH5g0187 . 1 134 NADPH P450 reductases AT5G48810 61.8 3.1e-46 181.4
HCH5g0902 . 1 134 NADPH P450 reductases AT5G48810 61.0 4.9e-44 174.1
HCH7g1737 . 1 134 NADPH P450 reductases AT5G48810 54.5 8.1e-39 156.8
HCH7g1423 . 22 133 NADPH P450 reductases AT2G32720 86.6 1.0e-51 199.5
HCH5g0187 . 22 133 NADPH P450 reductases AT2G32720 67.9 5.4e-40 160.6
HCH5g0902 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.3e-38 155.2
HCH10g0497 . 2 115 NADPH P450 reductases AT1G60660 65.0 5.4e-39 157.1
HCH4g0156 . 1 125 NADPH P450 reductases AT1G26340 56.0 4.3e-37 151.0
HCH9g0948 . 3 281 NADPH P450 reductases AT5G17770 82.8 9.5e-132 466.5
HCH11g0670 . 2 280 NADPH P450 reductases AT5G17770 80.0 6.4e-128 453.8
HCH5g0902 . 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-57 218.4
HCH7g1423 . 1 133 NADPH P450 reductases AT5G53560 66.9 7.5e-50 193.4
HCH5g0187 . 1 134 NADPH P450 reductases AT5G53560 61.2 1.1e-45 179.5
HCH7g1737 . 1 136 NADPH P450 reductases AT5G53560 57.4 5.4e-40 160.6
HCH7g1423 . 1 133 NADPH P450 reductases AT5G48810 66.7 6.0e-50 193.7
HCH5g0187 . 1 134 NADPH P450 reductases AT5G48810 61.8 3.1e-46 181.4
HCH5g0902 . 1 134 NADPH P450 reductases AT5G48810 61.0 4.9e-44 174.1
HCH7g1737 . 1 134 NADPH P450 reductases AT5G48810 54.5 8.1e-39 156.8
HCH7g1423 . 22 133 NADPH P450 reductases AT2G32720 86.6 1.0e-51 199.5
HCH5g0187 . 22 133 NADPH P450 reductases AT2G32720 67.9 5.4e-40 160.6
HCH5g0902 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.3e-38 155.2
HCH10g0497 . 2 115 NADPH P450 reductases AT1G60660 65.0 5.4e-39 157.1
HCH4g0156 . 1 125 NADPH P450 reductases AT1G26340 56.0 4.3e-37 151.0
HCH9g0948 . 3 281 NADPH P450 reductases AT5G17770 82.8 9.5e-132 466.5
HCH11g0670 . 2 280 NADPH P450 reductases AT5G17770 80.0 6.4e-128 453.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007837 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 0 34