Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0156 ATGCCAAGCATTTCGGCCCTTCATTCGATTCAAGAAATCTCCCAGCACCGTTCCAACGATGACTGTTGGATTCTTATCGATGGCAAGGTATACGACTTGACCCCATATTTGGATGAGCATCCTGGTGGAGATGATATCATTCTTGCTGCAACAGGCAGAGATGCCACAGAGGATTTTGAAGACGCCGGTCATAGCAAAGATGCGAGAGAGCTGATGGAGAAATTCTATATCGGTGTGCTTGATGGTACATCGTCCTCAGCTAGCCCGGAACTTGAATCTTCCACCGAAAATTGGATAATTGATTTAGCAGCTCAGTTTCAGGAGTTGGCAAAGCAATACTGGACAGTTCCTGTTGCAGTAATTGGTATTTCTGTGATATTTATCATTTTTGTAAAATTTTCAGCCATTGATTGGGGGGCATTGAGGAGAATTTTAGATTCTCTTGGACAGTTGGTCTTGTTGAGAAGATATGATGGGAATAAAATTAGAAAGAAAAAAAAGAGTTTTATTTTAAATTGTGTTCAAAAAAACACATTATATGTGGGTGGTTTAGCAGAGGAAGTAAACGAATCGATTCTTCACGCAGCGTTCATTCCATTCGGAGATATAAAAGATGTGAAAACTCCATTGGATCAAGCAACTCAAAAACACCGTTCATTTGGCTTCGTAACGTTCTTGGAAAAGGAAGATGCTTCCGCAGCCATGGATAATATGGACGGAGCTGAGCTATACGGCCGTGTTCTAACTGTCAATTACGCTCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCCGCTCAGCCTATTTGGGCGGATGCGGATACATGGTTTGAAAGACAGCAACAAGAGGAGGAAATGCAACGCATTCAGGCCGAGAATCAAGCAACTATGCAGGCCGCTGAGGAGTTGCATAGGAAGAAACTAGCCCAGGAGCGTGAAGGGGAAAAAGATGATGAGATAGAAACCAAGGAGGATCCTATGGCTAAGGCTGAAGCTGAGGTTTTAAGACAAAACAGTTGA 1023 43.5 MPSISALHSIQEISQHRSNDDCWILIDGKVYDLTPYLDEHPGGDDIILAATGRDATEDFEDAGHSKDARELMEKFYIGVLDGTSSSASPELESSTENWIIDLAAQFQELAKQYWTVPVAVIGISVIFIIFVKFSAIDWGALRRILDSLGQLVLLRRYDGNKIRKKKKSFILNCVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENQATMQAAEELHRKKLAQEREGEKDDEIETKEDPMAKAEAEVLRQNS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 866807 871910 + evm.model.ptg000015l.156 HCH4g0156 542400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0156 340 Coils Coil 280 307 - -
HCH4g0156 340 SMART Cyt_b5_2 8 81 IPR001199 -
HCH4g0156 340 MobiDBLite consensus disorder prediction 292 340 - -
HCH4g0156 340 FunFam Cytochrome b5 type B 3 85 - -
HCH4g0156 340 Gene3D - 6 90 IPR036400 -
HCH4g0156 340 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
HCH4g0156 340 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 81 IPR001199 -
HCH4g0156 340 CDD RRM_PPIE 179 253 IPR034168 GO:0003723(InterPro)
HCH4g0156 340 SMART rrm1_1 178 251 IPR000504 GO:0003723(InterPro)
HCH4g0156 340 SUPERFAMILY RNA-binding domain, RBD 175 264 IPR035979 GO:0003676(InterPro)
HCH4g0156 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 255 IPR000504 GO:0003723(InterPro)
HCH4g0156 340 MobiDBLite consensus disorder prediction 300 332 - -
HCH4g0156 340 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 96 IPR036400 -
HCH4g0156 340 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
HCH4g0156 340 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
HCH4g0156 340 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
HCH4g0156 340 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
HCH4g0156 340 Pfam RNA recognition motif 179 248 IPR000504 GO:0003723(InterPro)
HCH4g0156 340 Gene3D - 158 309 IPR012677 -
HCH4g0156 340 FunFam Peptidyl-prolyl cis-trans isomerase 170 322 - -
HCH4g0156 340 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
HCH4g0156 340 PANTHER ATPASE E1 174 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0156 HCH-Chr4:866807 HCH5g0902 HCH-Chr5:7492597 3.20E-25 dispersed
HCH2g1029 HCH-Chr2:53467641 HCH4g0156 HCH-Chr4:866807 8.30E-08 transposed
HCH3g0114 HCH-Chr3:741297 HCH4g0156 HCH-Chr4:866807 2.80E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0156 - - - 0.0