Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0160 ATGGGAAGGGGAAGAGTAGAGCTGAAGAAAATAGAGAACAAGATAAATAGACAGGTAACATTTACAAAGAGAAGGAATGGACTTCTTAAAAAGGCTTATGAACTCTCAATTCTCTGTGATGCTGAGGTGGCTCTCATCATCTTCTCAACCCGAGGCAAGCTCTATGAGTTTTCTAGCACCTCTAGTATGGCTAGGACATTGGATAGATACCAAAGGCAAAGACACAGTTATGGAGTATTGGTAGCTAGCCACCAATACTCAAAGGATACTGAGGAGATATGCCACCAAGAGTATTTGAAGTTGAAGACAGAAGTAGAACTCCTGCAACATTCTCAAAGACGATTTCTTGGGGAGGATTTGAATCATTTGGACACAGAGGAACTTGACCAACTTGAAATTCAATTAGAGACGACATTGAACCAAATCAGGTCCATAAAGAGCCAATCAATGTTTGATCAAATATCTGATCTCCAAAGAAAGGAAGAAATGCTGCTAGAAACAAACCAATCTTTGAGGAAGAAGTTGGAGGAAAGTAATATTGCAGCTGCAGTTCTTCAATCATCGTGGCAAGGAAGAGACCAAAATAATCTTGAATATGGTCGACGTGGGTCAGAGGCCTTTCTTCAGCCCTTACATGACAATAATAATAATGCACTGCACAACAGTTACAACCATCATGAAGATGTTCCAACTCAGGAAAATGTGGTAAATTCGGTGTTGCCTATGCCTTCACAATGGATGATGCTTTGA 750 40.27 MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSTSSMARTLDRYQRQRHSYGVLVASHQYSKDTEEICHQEYLKLKTEVELLQHSQRRFLGEDLNHLDTEELDQLEIQLETTLNQIRSIKSQSMFDQISDLQRKEEMLLETNQSLRKKLEESNIAAAVLQSSWQGRDQNNLEYGRRGSEAFLQPLHDNNNNALHNSYNHHEDVPTQENVVNSVLPMPSQWMML 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 909457 919643 + evm.model.ptg000015l.160 HCH4g0160 542404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0160 249 Coils Coil 128 148 - -
HCH4g0160 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0160 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0160 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0160 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0160 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0160 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0160 249 Coils Coil 154 177 - -
HCH4g0160 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH4g0160 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH4g0160 249 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH4g0160 249 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0160 249 Pfam K-box region 89 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH4g0160 249 FunFam MADS-box transcription factor 1 13 83 - -
HCH4g0160 249 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0160 249 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0160 HCH-Chr4:909457 HCH9g0326 HCH-Chr9:2032118 3.40E-56 dispersed
HCH4g0160 HCH-Chr4:909457 HCH4g0161 HCH-Chr4:923498 4.70E-42 tandem
HCH14g1163 HCH-Chr14:38453405 HCH4g0160 HCH-Chr4:909457 4.00E-29 transposed
HCH3g0132 HCH-Chr3:843746 HCH4g0160 HCH-Chr4:909457 2.00E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33399 PF01486 K-box 4.00E-25 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0160 K09264 - csv:101220998 295.434