Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0161 ATGGGTAGAGGTAGGGTTCAGTTGAAAAGGATTGAAAACAAAATCAACAGGCAGGTTACTTTCTCAAAAAGGAAAGCTGGGTTGTTGAAGAAAGCTCATGAGATCTCTGTTCTTTGTGATGCTGAAGTTGGTTTGATCGTCTTCTCCAACAAAGGAAAGCTCTTTGAATATGCAACTGATTCAAGCATGGAGAAAATACTTGAACGATACGAGAGATATTCTTATGTGGGGAGACAGCAACTTGCAATTTCTGAAATTGAATCTTCTCAGGGAAATTGGAATTTGGAATACTATAGACTGAAGTCCAAAGTTGAGCTTTTACAAAGAAACAATAGGCAATATTTGGGAGAAGAATTGGACTCATTGAGCGTCAAAGAACTGCAGAATTTGGAGCAACAGATAGATACTGCTCTTAAACATATTCGCTCAAGAAAAAATCAACTGATGTATGACTCCATCTCTTCACTTCAGAGAAAGGAAAGGGCTATACAAGAGCAAAACACCTTACTGGCAAAGCAGATTAAGGAGAAGGAGAAGGAGAAGGACATAGCAGAGCAGCAGGCCCAATGGGGGCATCATCATCAGCAGCCGCAGCAGCAATACCATGGTTATAATGCTTTATCTTTCTTACACCCACAACTAGCACCTCATCCCTCTCTAAATATTGGGCTTGCAAGTTTTGAGGCTCATCTATGA 696 40.37 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVGLIVFSNKGKLFEYATDSSMEKILERYERYSYVGRQQLAISEIESSQGNWNLEYYRLKSKVELLQRNNRQYLGEELDSLSVKELQNLEQQIDTALKHIRSRKNQLMYDSISSLQRKERAIQEQNTLLAKQIKEKEKEKDIAEQQAQWGHHHQQPQQQYHGYNALSFLHPQLAPHPSLNIGLASFEAHL 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 923498 927873 + evm.model.ptg000015l.161 HCH4g0161 542405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0161 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0161 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0161 231 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0161 231 FunFam MADS-box transcription factor MADS-MC 13 85 - -
HCH4g0161 231 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH4g0161 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 199 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH4g0161 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0161 231 Pfam K-box region 87 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH4g0161 231 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0161 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0161 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0161 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0161 231 Coils Coil 156 187 - -
HCH4g0161 231 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH4g0161 231 Coils Coil 127 147 - -
HCH4g0161 231 Gene3D - 13 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0161 231 MobiDBLite consensus disorder prediction 177 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1556 HCH-Chr12:42203688 HCH4g0161 HCH-Chr4:923498 7.30E-33 dispersed
HCH3g0132 HCH-Chr3:843746 HCH4g0161 HCH-Chr4:923498 2.00E-48 dispersed
HCH4g0161 HCH-Chr4:923498 HCH9g0327 HCH-Chr9:2041713 1.80E-59 dispersed
HCH4g0160 HCH-Chr4:909457 HCH4g0161 HCH-Chr4:923498 4.70E-42 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33400 PF01486 K-box 2.40E-28 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0161 K09264 - csv:101219414 322.783