Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0169 ATGAGAACGGGAAAGAACAATCAAGAAGAGGAAGATTACGAAGAAGACGAATTAGGTGCTAAAAGAGTGGGACCTTCTTTCACTTCTAATGCTAACAACAGCATCAGTAGCAGCAGCAAAGAATTGGAATTAGATGTGAAGAACAATGATAAGGCTAATGCTGTACGGTCAAAACACTCGGTCACTGAGCAGCGTAGACGGAGCAAGATAAATGAGAGATTTCAGATTTTGAGAGATCTTATACCTCACAGTGATCAAAAGAGGGATACAGCGTCATTTTTATTGGAGGTGATTGATTATGTTCAGTATTTACAGGAAAAGGTGCAAAAGTATGAGGGTTCATATCAGGGTTGGAGTGGGGAACCTACTAAGTTAATACCATGGAGAAATAGTCATTGGCGCATGCAGAGTTTTGTTGGTCATCCTCAAGCTGTAAAGAATGGTTCCGCTCCAGGATCCACATACTCAGGGAAGTTTGAAGATAACAACATTTCAATCTCACCAACCATGCTTACAAGCTCACAAAATCCTCTAGAGTCCAACACAGGCAGAGATATTCTACAGGAAGCTGACATAACAAATAAGGGAGTGCCGCTGCCTATGGAAGGAAATATACCTGCTTCTATCCGAAGTGACAGTTTGCTTGATCAATCTCTTCACGTTCCGATTTCTGATGCACAGCCAACAGAGCGCCTCATCTCTAACAATGCCATGAGTCATCCAGAGGAGATGACTATTGAAGGGGGCACAATTAGCGTTTCAAGTCTTTATTCAGAAGGGTTATTGAATAGCTTGACTCAAGCTCTGCAGAATACTGGGCTGGATCTGTCACAAGCTAGCATCTCTGTTCAGATTGATCTCGGGAAGAAAGCTAAAGCAATGACGTTTGGAACATCTATTTTTAAGGAAACTGGTAATCATCCCGCTGGGAACCCGGGATTGGTGCATATCGGGGACTTAGGCAGTGGAGAGGACGACTCAGATCAAGCTAAAAAGAGGCTGAGGACATGA 1011 43.03 MRTGKNNQEEEDYEEDELGAKRVGPSFTSNANNSISSSSKELELDVKNNDKANAVRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIDYVQYLQEKVQKYEGSYQGWSGEPTKLIPWRNSHWRMQSFVGHPQAVKNGSAPGSTYSGKFEDNNISISPTMLTSSQNPLESNTGRDILQEADITNKGVPLPMEGNIPASIRSDSLLDQSLHVPISDAQPTERLISNNAMSHPEEMTIEGGTISVSSLYSEGLLNSLTQALQNTGLDLSQASISVQIDLGKKAKAMTFGTSIFKETGNHPAGNPGLVHIGDLGSGEDDSDQAKKRLRT 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 978442 982145 - evm.model.ptg000015l.169 HCH4g0169 542413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0169 336 SMART finulus 60 110 IPR011598 GO:0046983(InterPro)
HCH4g0169 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 125 IPR036638 GO:0046983(InterPro)
HCH4g0169 336 CDD bHLH_AtBIM_like 53 129 - -
HCH4g0169 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 104 IPR011598 GO:0046983(InterPro)
HCH4g0169 336 MobiDBLite consensus disorder prediction 1 67 - -
HCH4g0169 336 MobiDBLite consensus disorder prediction 25 42 - -
HCH4g0169 336 FunFam BHLH domain class transcription factor 52 124 - -
HCH4g0169 336 Pfam Helix-loop-helix DNA-binding domain 56 105 IPR011598 GO:0046983(InterPro)
HCH4g0169 336 Gene3D - 52 122 IPR036638 GO:0046983(InterPro)
HCH4g0169 336 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 3 336 IPR044295 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
HCH4g0169 336 MobiDBLite consensus disorder prediction 321 336 - -
HCH4g0169 336 MobiDBLite consensus disorder prediction 43 67 - -
HCH4g0169 336 MobiDBLite consensus disorder prediction 317 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0169 HCH-Chr4:978442 HCH9g0334 HCH-Chr9:2076325 5.60E-54 dispersed
HCH4g0169 HCH-Chr4:978442 HCH8g1219 HCH-Chr8:47559192 8.00E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33401 PF00010 HLH 1.90E-13 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0169 - - - 0.0