Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0178 ATGTCCTCTGCTGATCCGCCATCGTCTGCCACCGGCGTTGGTCTTGGATACGGGATTGCTATCGCGGTTAGCATTCTCGTCTTCATTTCCACCATCATGCTAGTTTCCTACGCTTGCATTCGAGTCAAAGGCAACCGGCGAGCTGCGGTGAGTGAACTCACAAACAACGGCCTTCCCACGACGGCTCATTCGACGGACAATGTGGTGGTGCTCATGATGGGCTTAGATGGATCCATCATAGAATCATACCCCAAGTTAGAATTGGGTGAAAGCCGGCGGCTGCCGGAGCCCAATAACGGTCCATGTTCCATTTGCCTTTCCGACTATCAGCCGAAGGATTCTGTACGGTGCATCCCACAGTGTCGTCATTGTTTCCACGTTGATTGTATTGATGAATGGCTACGGATGAACGCCACGTGTCCTTTGTGTAGAAATTCTCCTGCTCCCACTCCCATGGCTACCCCTCTCTCAGAGTTGGTTCCTCTTGCTTTCAATGCCAGGTGA 504 51.98 MSSADPPSSATGVGLGYGIAIAVSILVFISTIMLVSYACIRVKGNRRAAVSELTNNGLPTTAHSTDNVVVLMMGLDGSIIESYPKLELGESRRLPEPNNGPCSICLSDYQPKDSVRCIPQCRHCFHVDCIDEWLRMNATCPLCRNSPAPTPMATPLSELVPLAFNAR 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1026724 1027227 + evm.model.ptg000015l.178 HCH4g0178 542422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0178 167 CDD RING-H2_EL5-like 102 144 - -
HCH4g0178 167 PANTHER RING-H2 FINGER PROTEIN ATL67 9 166 IPR044289 GO:0016567(InterPro)|GO:0016740(InterPro)
HCH4g0178 167 SMART ring_2 102 143 IPR001841 -
HCH4g0178 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 149 IPR013083 -
HCH4g0178 167 Pfam Ring finger domain 102 144 IPR001841 -
HCH4g0178 167 SUPERFAMILY RING/U-box 95 150 - -
HCH4g0178 167 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1307 HCH-Chr11:45062786 HCH4g0178 HCH-Chr4:1026724 2.00E-28 dispersed
HCH13g1105 HCH-Chr13:36189755 HCH4g0178 HCH-Chr4:1026724 1.90E-25 dispersed
HCH1g0352 HCH-Chr1:50366220 HCH4g0178 HCH-Chr4:1026724 4.90E-13 dispersed
HCH3g0333 HCH-Chr3:2097053 HCH4g0178 HCH-Chr4:1026724 3.70E-11 dispersed
HCH3g1361 HCH-Chr3:51336565 HCH4g0178 HCH-Chr4:1026724 2.30E-10 dispersed
HCH4g0178 HCH-Chr4:1026724 HCH7g1702 HCH-Chr7:48905488 9.00E-29 dispersed
HCH4g0178 HCH-Chr4:1026724 HCH6g1267 HCH-Chr6:46976968 3.60E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0178 - - - 0.0