Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0180 ATGGCTGATGCCAGTCCTAGTACAGATGTCTCAACTGATGGGGACACAGATGAAAAAAGCCAGAGGGCGTTTGATGGGGCTCTTGCTTTGGTTTCTGATTCTAGTGACAGATCAAAGGATAAAACTGATCAGAAGGTTCTTCGCAGGCTTGCACAAAATCGCGAGGCTGCTCGAAAAAGTCGCTTGAGGAAAAAAGCATATGTTCAACAGCTAGAGAGCAGTCGTTTAAAGTTGACGCAACTAGAGCAGGAGCTTCAGCGAGCACGTCAGCAGGGTGTTTTCATCTCAAGCCCAGGTGACCAGACTCATATGATGAGTGGAAATGGGGCCATGACATTTGATGTAGAATATGCACGGTGGCTTGAAGACCATAATCGTCAAATCAATGAATTGAGATCAGCTGTTAATTCTCACGCGAGTGACATGGAATTGCGAATCGTTATTGATGGTACTTTAGCACACTATGATGAACTTTTCAAGCTTAAAGGCGATGCGGCAAAGACAGACGTTTTCCATTTATTATCTGGCATGTGGAAAACACCTGCTGAGAGATGTTTTCTATGGCTTGGGGGTTTTCGTTCATCTGAGCTCTTGAAGCTTCTTGTAAATCAATTGGAGCCTCTAACAGAGCAGCAGGTGGTGGGAATTACCAACTTGCAGCAATCATCACAGCAGGCAGAAGATGCATTATCTCAAGGGATGGAGGCGTTGCAACAATCCCTGGCAGAGACGTTGTCGACTGGATCTCCTGGTTCCTCGGGTTCATCGGGGAATGTAGCAAACTACATGGGTCAAATGGCCATGGCCATGGGTAAACTAGGGACCCTTGAGGGTTTTATACGCCAAGCTGATAATCTGCGGCAACAGACACTACAACAATTGCATCGTATATTGACGACTCGTCAGTCTGCTCGCGCACTTCTTGCCATACACGATTATTTTTCCCGGCTACGGGCTCTTAGTTCCCTCTGGCTTGCACGCCCAAGAGAGTAA 993 46.73 MADASPSTDVSTDGDTDEKSQRAFDGALALVSDSSDRSKDKTDQKVLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSPGDQTHMMSGNGAMTFDVEYARWLEDHNRQINELRSAVNSHASDMELRIVIDGTLAHYDELFKLKGDAAKTDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQVVGITNLQQSSQQAEDALSQGMEALQQSLAETLSTGSPGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQLHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1035219 1038696 - evm.model.ptg000015l.180 HCH4g0180 542424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0180 330 Pfam bZIP transcription factor 44 85 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0180 330 CDD bZIP_HBP1b-like 45 97 - -
HCH4g0180 330 FunFam BZIP family transcription factor 44 93 - -
HCH4g0180 330 SUPERFAMILY Leucine zipper domain 45 88 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0180 330 Coils Coil 121 141 - -
HCH4g0180 330 PANTHER TRANSCRIPTION FACTOR TGA9 21 330 - -
HCH4g0180 330 SMART brlzneu 41 110 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0180 330 Pfam Seed dormancy control 127 202 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH4g0180 330 MobiDBLite consensus disorder prediction 1 44 - -
HCH4g0180 330 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 43 87 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0180 330 ProSiteProfiles DOG1 domain profile. 110 327 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH4g0180 330 Coils Coil 64 91 - -
HCH4g0180 330 Gene3D - 44 93 - -
HCH4g0180 330 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 48 63 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0584 HCH-Chr11:10875704 HCH4g0180 HCH-Chr4:1035219 1.10E-90 dispersed
HCH13g0060 HCH-Chr13:354454 HCH4g0180 HCH-Chr4:1035219 4.70E-78 dispersed
HCH4g0180 HCH-Chr4:1035219 HCH9g1135 HCH-Chr9:14851883 1.00E-84 dispersed
HCH10g1252 HCH-Chr10:44442516 HCH4g0180 HCH-Chr4:1035219 2.30E-114 transposed
HCH1g0618 HCH-Chr1:55122479 HCH4g0180 HCH-Chr4:1035219 1.70E-135 transposed
HCH2g1264 HCH-Chr2:54915243 HCH4g0180 HCH-Chr4:1035219 3.30E-92 transposed
HCH9g1309 HCH-Chr9:41872209 HCH4g0180 HCH-Chr4:1035219 4.60E-131 transposed
HCH13g1272 HCH-Chr13:40631032 HCH4g0180 HCH-Chr4:1035219 1.90E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33402 PF14144 DOG1 2.00E-31 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0180 K14431 - csv:101213210 548.125