Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0194 ATGCCTCTTACTATCCAATCTTCTTCATCATCTGCATCGGCGGTTCAACTCCGGCAACTTGACCCGAAAATCTGGAGAGCTTGTTCCGGCAACAATGCTCAAATTCCGATCATCGGTTCTAAGGTATATTATTTCATTCAAGGACATGTTGAACAATCTGTTGCTCCTCCACTACTTTCTCCTAATGTGTTTTCGAAACCTGTTATTCCTTGTCGTATCTCTTCCGCTCAATTACTCGCCGATTCTCGTACCGATGAGGTTTTTGCTAAATTGATTCTTAATCCTATTAACGATCCTAATTCCGATGCTGCTTCTCTTCAATTTCGTTCTGGTAATGATGTTGTTGAGGAGGAGGAAGGAGAGAATAGAATTGAGGCGTTTGCTAAAGTTCTTACGTCTTCTGATGCTAATAATGGCGGTGGATTCTCGGTTCCGAGATACTGCGCCGATACTATTTTTCCTCCCTTGAATTACCAGGCGGATCCGCCGGTACAGACATTGTCGGTTACTGATGTTCACGGAGTCGTTTGGAATTTTAGACATATTTACCGTGGGACGCCGAGGCGGCATTTGCTTACTACTGGATGGAGTAAGTTTGTGAATCATAAGAAGTTGGTTGCTGGCGATTCGGTTGTTTTTATGAAGAATTCGAGAGGTGAGATGTTTGTTGGTGTTCGACGTGCTGTTAGGTCTAGTGGATGTGTTAGTGAGTGTATGAGACGGAGTGCGCCAATGGTTGGCGTGAGAGGCAGTTCAGATGAGAATCCTTCTGGAGAAGGAAGAAAGGAAGTTTTCTCCAGGAATGGTCTAGGGAAGTTGTCTGCTGAGGAGGTGGCAAAGGCAGCAGAGTTGGCGGCTCAATCTATGCCGTTTGAGGTTGTGTATTATCCTAGGGCTGGGTGGTCGGAGTTTGTAGTAAAGGCAGAGAAGGTGGATGAATCGATGAATTTTTATTGGACGTCTGGAATTAGGGTGAAAATGCCTATGGAGACAGAGGATTCATCGAGGATTACTTGGTATCAAGGGACTGTATCTTCGACGTCATCAATTACTGATCACGGACTTTGGCAGGGTTCTCCATGGCGTATGCTTCAGGTTACATGGGATGAAGCCGAAGCCTTGCAGAATGCTAAGAGGGTGAGCCCTTGGGAAATTGAATTTGCTACGCCCTCCACTCCAGTACAAGCTCCCCTCCATCCAGCCAAGAGATTTAGAGGTCCCCAGAAATCTGGGACGTTGAACGGTGAAGAACTATTTTCTCCTGTGATGAGATTCAGTGATCCAACAGTGGAGCAATTCAACTTCAACCAAACCTTGTTGAATTACAACACTTTTCCTGCAGGCATGCAGGGAGCCAGGCAAAATTTATTCTGTGAATCGAGGTTATCCAACTCGTATAATGAAACTATTCCATTCACATGTGTTGACAATTCCATGTCCCATCTGAATGGGGTTCCCAAGTTGAAAATGGTGTCTACTGAGTTACTAATTGGTAGTCCACAGTCTGATGACTTATCTCCTGTTAGTCTGTGTAGTGTTCTTTCCTTTTCCTCTGAAACTGCTGGGAACCAGATTGACAGCTCGACGAAAGTTCGGAAAATTTCATTTCCGTTGTTTGGTCAAATCATCTATACGGATCAGCCTATTGAAAATGAACTAGGTGATGGTGCTTACACTAATGATGGTGACAACAATCCTAATCAATCCACTTGA 1713 44.42 MPLTIQSSSSSASAVQLRQLDPKIWRACSGNNAQIPIIGSKVYYFIQGHVEQSVAPPLLSPNVFSKPVIPCRISSAQLLADSRTDEVFAKLILNPINDPNSDAASLQFRSGNDVVEEEEGENRIEAFAKVLTSSDANNGGGFSVPRYCADTIFPPLNYQADPPVQTLSVTDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFMKNSRGEMFVGVRRAVRSSGCVSECMRRSAPMVGVRGSSDENPSGEGRKEVFSRNGLGKLSAEEVAKAAELAAQSMPFEVVYYPRAGWSEFVVKAEKVDESMNFYWTSGIRVKMPMETEDSSRITWYQGTVSSTSSITDHGLWQGSPWRMLQVTWDEAEALQNAKRVSPWEIEFATPSTPVQAPLHPAKRFRGPQKSGTLNGEELFSPVMRFSDPTVEQFNFNQTLLNYNTFPAGMQGARQNLFCESRLSNSYNETIPFTCVDNSMSHLNGVPKLKMVSTELLIGSPQSDDLSPVSLCSVLSFSSETAGNQIDSSTKVRKISFPLFGQIIYTDQPIENELGDGAYTNDGDNNPNQST 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1155945 1158748 - evm.model.ptg000015l.194 HCH4g0194 542438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0194 570 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 551 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH4g0194 570 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
HCH4g0194 570 Gene3D - 124 229 IPR015300 -
HCH4g0194 570 FunFam Auxin response factor 125 229 - -
HCH4g0194 570 SUPERFAMILY DNA-binding pseudobarrel domain 120 233 IPR015300 -
HCH4g0194 570 CDD B3_DNA 127 227 IPR003340 GO:0003677(InterPro)
HCH4g0194 570 MobiDBLite consensus disorder prediction 246 265 - -
HCH4g0194 570 Pfam Auxin response factor 281 365 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH4g0194 570 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677(InterPro)
HCH4g0194 570 Gene3D - 319 392 - -
HCH4g0194 570 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0194 HCH-Chr4:1155945 HCH9g0585 HCH-Chr9:3937229 9.30E-102 dispersed
HCH4g0194 HCH-Chr4:1155945 HCH2g1183 HCH-Chr2:54337450 4.50E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33403 PF02362 B3 5.70E-22 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0194 K14486 - csv:101216118 621.698