Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0195 ATGGCGTTGCAGAATATTGGTGCCTCCAACCGTGATGATGCCTTCTATAGGTATAAGATGCCTAGAATGGTTACTAAAATTGAAGGTAGAGGTAATGGCATCAAAACTAATGTGGTTAACATGGTCGAAATTGCTAAAGCCTTGGGCAGACCTGCTGCTTACACCACGAAGTATTTTGGGTGTGAGCTTGGAGCACAATCGAAGTTTGATGAGAAAACTGGTGTTTCTCTTGTGAATGGTGCACATGAAACTGCCAAGCTTGCTGGTCTTCTTGAAAACTTCATCAAGAAATATGTTCAATGCTACGGATGTGGAAACCCTGAAACTGAGATCATTATTACCAAGACTCAGATGATCACTATGAAATGTGCTGCCTGTGGATTTATATCTGATGTTGACATGAGGGATAAGCTCACTACATTCATTCTCAAGAATCCTCCTGAACAGAAGAAGGGATCAAAAGACAAGAAAGCAATGAGGAGGGCTGAGAAGGAAAGGCTTAAGGAGGGAGAAGCTGCTGATGAGGAGCTGAAGAAAATAAAAAAGGAATCTCTAAAGAAGAAAAGTACTACTGGTAATAATACAAAAGAAGTTACCAAAGTGCCAAGCAAGAAGAAACACGCTGGCTCCGATGAGGACCATTCTCCAACTCATAGCCAAGCTGATGATAATGACCATGCTGATGATGATGGCAATGATGATGTGCAGTGGCAAACAGACACCTCATTGGAGGCAGCTAAGCAGCGTATTCAGGAGCAGTTGAGTGCTGCAACGGCTGATATGGTCATGCTATCTACAAATGAAGAGAAGAAGCCGGCAAAGAAGTCACCCGAACATGAGAAATCTGAAGCCAATGGAGACAAGAACGGGAATGACATTTCTCCCCATGCATTGCTTGTTGGGGAGATTAAGGATTATCTGAAGAAAGGTTCTCCTGCAAGCCAGCTTAAATCCTTTTTGGATTCTCTTTCTGGAACTTCCCAAGAGATTGTAAATGCTTTTATCGAGGCTCTCTTTGATGGTGCGGGGAAAGGTTTTTCAAAGGAGGCAGTGAAAAAGAAGAGCTTCTTGGCTGTAGCTGCTGCTGGCGAGGGATCGCAGATTGTTCTTTTGCGTGCCATCGAGGCATTCTGTCTTAGTTCAACTGAAGCTGCTAAGGAGGTGGCACTGGTCCTGAAATCACTCTATGACAGTGATGTGTTAGAGGAGGAATTTGTATTTGAATGGTACCAGCAAGGTTTGACTGGTGCTCACAAAAGTTCTCAGATATGGAAGAATGCAAAGCCCTTCATTGAATGGCTTCAGAACGCTGAGTCGGAATCTGAAGAAGAGTGA 1335 43.52 MALQNIGASNRDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVEIAKALGRPAAYTTKYFGCELGAQSKFDEKTGVSLVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEAADEELKKIKKESLKKKSTTGNNTKEVTKVPSKKKHAGSDEDHSPTHSQADDNDHADDDGNDDVQWQTDTSLEAAKQRIQEQLSAATADMVMLSTNEEKKPAKKSPEHEKSEANGDKNGNDISPHALLVGEIKDYLKKGSPASQLKSFLDSLSGTSQEIVNAFIEALFDGAGKGFSKEAVKKKSFLAVAAAGEGSQIVLLRAIEAFCLSSTEAAKEVALVLKSLYDSDVLEEEFVFEWYQQGLTGAHKSSQIWKNAKPFIEWLQNAESESEEE 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1162123 1163457 - evm.model.ptg000015l.195 HCH4g0195 542439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0195 444 CDD W2_eIF5 294 442 - -
HCH4g0195 444 ProSiteProfiles W2 domain profile. 285 444 IPR003307 GO:0005515(InterPro)
HCH4g0195 444 MobiDBLite consensus disorder prediction 268 287 - -
HCH4g0195 444 MobiDBLite consensus disorder prediction 199 225 - -
HCH4g0195 444 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH4g0195 444 Gene3D - 105 145 - -
HCH4g0195 444 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH4g0195 444 SUPERFAMILY ARM repeat 297 438 IPR016024 -
HCH4g0195 444 Gene3D - 2 104 - -
HCH4g0195 444 SMART 542_3 354 440 IPR003307 GO:0005515(InterPro)
HCH4g0195 444 MobiDBLite consensus disorder prediction 268 295 - -
HCH4g0195 444 MobiDBLite consensus disorder prediction 148 190 - -
HCH4g0195 444 MobiDBLite consensus disorder prediction 143 236 - -
HCH4g0195 444 FunFam Eukaryotic translation initiation factor 5 105 145 - -
HCH4g0195 444 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH4g0195 444 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH4g0195 444 Gene3D - 301 444 - -
HCH4g0195 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 440 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005092(PANTHER)|GO:0005829(PANTHER)|GO:0006413(InterPro)|GO:0071074(PANTHER)
HCH4g0195 444 FunFam Eukaryotic translation initiation factor 5 1 104 - -
HCH4g0195 444 Pfam eIF4-gamma/eIF5/eIF2-epsilon 367 444 IPR003307 GO:0005515(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0195 K03262 - csv:101210873 714.916