Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0203 ATGGCAGCTATGATGGATTTATATGGTTATAGACCTTTTGAATCAGATCCTTGTGGTTATGGTGGTGAATTAATGGAAGCTCTTGAACCTTTTATCAAAGTTGCTTCCTCTCCCACTTCTTTTCTCTCTCCTGAATTTTCTTCTTCTTCTTCTTCTCCTTACAACAACTTCTCTTTCTCTCACCTCTCTTCTCTCTCTTCAAATCAGACGGAATCTACCTCTTCTTCTTACCTTAATGATTGTTCCAATCCGATGACCCATATATTATCAAGCGGGTTTTCGGGTCAGAACATGGATCCATCGTGTTCTATTGGAATCAATCACTTAACCCCATTTCAGATCCAACAGATCCAATCTCAATTCAATCTCCAAAATCAAATCCAACCAATTTTGGGACAGATCAACAACACCCAACAAAAGAACTGTCTCAATTCTCTTGGTCCAAAACCCATATTAATGAAACAAGTGGGATCGGGTATGGGTACGGGTTCGGGTTGTCCTCCAAAACCGGCGAAGCTTTACAGAGGAGTAAGACAAAGGCATTGGGGGAAATGGGTGGCTGAAATTCGTCTTCCGAGAAACCGGACACGACTTTGGCTCGGCACTTTCGATACCGCCGAGGAAGCTGCTTTGGCTTACGACAAAGCTGCTTATAAGCTTCGTGGCGATTTTGCCAGACTCAATTTCCCTCACCTTAAGCACCGCGGCTCCTCTGTCGGCATCGGCATCGGTAGTGGCGCCGATTATCAGCCTCTCCATTCCGCCGTCGATGCGAAGCTCGAAGCCATTTGTCAAAGTTTAGCCGAGTCTCAGAAGCAAGGGAAGTCCGAGAGGGCTGGAAAGAAGTCGAAGGCGAAAGCGACGCCTACGCCGGTGATCGATGATTTGAAAGCTGTGGCGGAAGTTGGATCGACGGAGATTTGTTCAAAGGTGGAGAACTCCTCGTCGCCGGTTACGGATACAAACACGGCCGAGAGCGATGAGTCGGAAGGGTCTTCGCCTTTATCGGATCTTACGTTCCCCGATCCGACGGAGGATTTGGCGTGGGAGAAGCAACCTTCGGAGAATTGTATGTTGCAAAAATATCCATCGGAAATTGACTGGGCTTCGATTTTCACTTCTTAA 1125 46.84 MAAMMDLYGYRPFESDPCGYGGELMEALEPFIKVASSPTSFLSPEFSSSSSSPYNNFSFSHLSSLSSNQTESTSSSYLNDCSNPMTHILSSGFSGQNMDPSCSIGINHLTPFQIQQIQSQFNLQNQIQPILGQINNTQQKNCLNSLGPKPILMKQVGSGMGTGSGCPPKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHRGSSVGIGIGSGADYQPLHSAVDAKLEAICQSLAESQKQGKSERAGKKSKAKATPTPVIDDLKAVAEVGSTEICSKVENSSSPVTDTNTAESDESEGSSPLSDLTFPDPTEDLAWEKQPSENCMLQKYPSEIDWASIFTS 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1221660 1222784 + evm.model.ptg000015l.203 HCH4g0203 542447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0203 374 CDD AP2 172 232 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0203 374 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 21 371 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
HCH4g0203 374 MobiDBLite consensus disorder prediction 310 352 - -
HCH4g0203 374 FunFam Ethylene-responsive transcription factor 2 172 231 - -
HCH4g0203 374 Pfam AP2 domain 173 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0203 374 PRINTS Ethylene responsive element binding protein signature 174 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0203 374 PRINTS Ethylene responsive element binding protein signature 196 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0203 374 Gene3D AP2/ERF domain 173 231 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0203 374 ProSiteProfiles AP2/ERF domain profile. 173 230 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0203 374 SUPERFAMILY DNA-binding domain 173 231 IPR016177 GO:0003677(InterPro)
HCH4g0203 374 MobiDBLite consensus disorder prediction 310 339 - -
HCH4g0203 374 SMART rav1_2 173 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH4g0203 374 MobiDBLite consensus disorder prediction 269 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0776 HCH-Chr12:5017126 HCH4g0203 HCH-Chr4:1221660 6.20E-75 dispersed
HCH14g0490 HCH-Chr14:33908997 HCH4g0203 HCH-Chr4:1221660 2.90E-60 dispersed
HCH2g0811 HCH-Chr2:51706687 HCH4g0203 HCH-Chr4:1221660 2.90E-27 dispersed
HCH4g0203 HCH-Chr4:1221660 HCH6g1416 HCH-Chr6:47977714 5.30E-29 dispersed
HCH4g0203 HCH-Chr4:1221660 HCH6g1261 HCH-Chr6:46921751 3.50E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33404 PF00847 AP2 5.00E-15 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0203 K09286 - csv:101222833 389.037