Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0203 | ATGGCAGCTATGATGGATTTATATGGTTATAGACCTTTTGAATCAGATCCTTGTGGTTATGGTGGTGAATTAATGGAAGCTCTTGAACCTTTTATCAAAGTTGCTTCCTCTCCCACTTCTTTTCTCTCTCCTGAATTTTCTTCTTCTTCTTCTTCTCCTTACAACAACTTCTCTTTCTCTCACCTCTCTTCTCTCTCTTCAAATCAGACGGAATCTACCTCTTCTTCTTACCTTAATGATTGTTCCAATCCGATGACCCATATATTATCAAGCGGGTTTTCGGGTCAGAACATGGATCCATCGTGTTCTATTGGAATCAATCACTTAACCCCATTTCAGATCCAACAGATCCAATCTCAATTCAATCTCCAAAATCAAATCCAACCAATTTTGGGACAGATCAACAACACCCAACAAAAGAACTGTCTCAATTCTCTTGGTCCAAAACCCATATTAATGAAACAAGTGGGATCGGGTATGGGTACGGGTTCGGGTTGTCCTCCAAAACCGGCGAAGCTTTACAGAGGAGTAAGACAAAGGCATTGGGGGAAATGGGTGGCTGAAATTCGTCTTCCGAGAAACCGGACACGACTTTGGCTCGGCACTTTCGATACCGCCGAGGAAGCTGCTTTGGCTTACGACAAAGCTGCTTATAAGCTTCGTGGCGATTTTGCCAGACTCAATTTCCCTCACCTTAAGCACCGCGGCTCCTCTGTCGGCATCGGCATCGGTAGTGGCGCCGATTATCAGCCTCTCCATTCCGCCGTCGATGCGAAGCTCGAAGCCATTTGTCAAAGTTTAGCCGAGTCTCAGAAGCAAGGGAAGTCCGAGAGGGCTGGAAAGAAGTCGAAGGCGAAAGCGACGCCTACGCCGGTGATCGATGATTTGAAAGCTGTGGCGGAAGTTGGATCGACGGAGATTTGTTCAAAGGTGGAGAACTCCTCGTCGCCGGTTACGGATACAAACACGGCCGAGAGCGATGAGTCGGAAGGGTCTTCGCCTTTATCGGATCTTACGTTCCCCGATCCGACGGAGGATTTGGCGTGGGAGAAGCAACCTTCGGAGAATTGTATGTTGCAAAAATATCCATCGGAAATTGACTGGGCTTCGATTTTCACTTCTTAA | 1125 | 46.84 | MAAMMDLYGYRPFESDPCGYGGELMEALEPFIKVASSPTSFLSPEFSSSSSSPYNNFSFSHLSSLSSNQTESTSSSYLNDCSNPMTHILSSGFSGQNMDPSCSIGINHLTPFQIQQIQSQFNLQNQIQPILGQINNTQQKNCLNSLGPKPILMKQVGSGMGTGSGCPPKPAKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHRGSSVGIGIGSGADYQPLHSAVDAKLEAICQSLAESQKQGKSERAGKKSKAKATPTPVIDDLKAVAEVGSTEICSKVENSSSPVTDTNTAESDESEGSSPLSDLTFPDPTEDLAWEKQPSENCMLQKYPSEIDWASIFTS | 374 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1221660 | 1222784 | + | evm.model.ptg000015l.203 | HCH4g0203 | 542447 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0203 | 374 | CDD | AP2 | 172 | 232 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH4g0203 | 374 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 21 | 371 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
HCH4g0203 | 374 | MobiDBLite | consensus disorder prediction | 310 | 352 | - | - | |
HCH4g0203 | 374 | FunFam | Ethylene-responsive transcription factor 2 | 172 | 231 | - | - | |
HCH4g0203 | 374 | Pfam | AP2 domain | 173 | 222 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH4g0203 | 374 | PRINTS | Ethylene responsive element binding protein signature | 174 | 185 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH4g0203 | 374 | PRINTS | Ethylene responsive element binding protein signature | 196 | 212 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH4g0203 | 374 | Gene3D | AP2/ERF domain | 173 | 231 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH4g0203 | 374 | ProSiteProfiles | AP2/ERF domain profile. | 173 | 230 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH4g0203 | 374 | SUPERFAMILY | DNA-binding domain | 173 | 231 | IPR016177 | GO:0003677(InterPro) | |
HCH4g0203 | 374 | MobiDBLite | consensus disorder prediction | 310 | 339 | - | - | |
HCH4g0203 | 374 | SMART | rav1_2 | 173 | 236 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH4g0203 | 374 | MobiDBLite | consensus disorder prediction | 269 | 289 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0776 | HCH-Chr12:5017126 | HCH4g0203 | HCH-Chr4:1221660 | 6.20E-75 | dispersed | |
HCH14g0490 | HCH-Chr14:33908997 | HCH4g0203 | HCH-Chr4:1221660 | 2.90E-60 | dispersed | |
HCH2g0811 | HCH-Chr2:51706687 | HCH4g0203 | HCH-Chr4:1221660 | 2.90E-27 | dispersed | |
HCH4g0203 | HCH-Chr4:1221660 | HCH6g1416 | HCH-Chr6:47977714 | 5.30E-29 | dispersed | |
HCH4g0203 | HCH-Chr4:1221660 | HCH6g1261 | HCH-Chr6:46921751 | 3.50E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33404 | PF00847 | AP2 | 5.00E-15 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH4g0203 | K09286 | - | csv:101222833 | 389.037 |