Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g0243 | ATGGCGTTAGATACTGTGGTTTATCCACAGGATACCTTCAGTTATGTTTTCAAAGATTTCTGTTCTTTTGGAGGAGGAGGTGCTTGGGGCTATGACTATGGCTTCCAAGAAGAAGATAAAGCCTTTCTTGGAGTTCTTGACAACCATTTTGAGCAGAAATTGACTACTCATTGGGAAGCTTCACCTGATGAATGTTCCACCGATCAGTCACTTCCCGCTCCCGGGGTTCACTACCCGCCCGTGGAGGTGGAACCGCCACCACCGCCACCAACTACAGGAGGAAGAAGGAAGCGGCGGCGAACTCGGAGCACCAAGAACAAGGAGGAAATTGAGAACCAAAGGATGACCCATATCGCCGTCGAGCGAAACCGCCGGAAACAGATGAACGAATATCTCACCGTCCTCCGATCACTCATGCCGTCATCTTATGTTCAAAGGGGAGACCAAGCTTCTATTATTGGTGGTGCCATCAACTTTGTTAAGGAGCTTGAGCAGCAGTTGCAGTTCATTAAGGCTCATAAGGAGGAGATAACGCCGCCGCCGCCACTTCCGCCGCTCGATCATGGCAGCCGGCTTTCACCTTTCGCTCAATTCTTCTCCTTCCCACAATACTCAACTAGTGCAACTCAATGCAAAAACTCAGGAAATGAGTTGGGAGCGACGGCGCAGAACCAGTGGGCGGCCGGAGACATAGAAGTGACCATGGTTGACAGCCATGCGAACCTTAAAATACTATCGAAGAAACGGCCCCGACAGCTGTTGAAGATGGTTGCCGGATTCCAAAGCTTGAGACTCACCATTCTGCACCTCAATGTCACAACTTTAGATCAAATGGTGCTTTACTCCGTAAGCATTAAGGTTGAAGAAGGATGCCAGTTGAATACAATAGATGAAATAGCAGCAGCAGTGAATCAAATCCTGCTTTCAATTCAAGAGGAAGCTGCCTTTAGCTGA | 954 | 48.74 | MALDTVVYPQDTFSYVFKDFCSFGGGGAWGYDYGFQEEDKAFLGVLDNHFEQKLTTHWEASPDECSTDQSLPAPGVHYPPVEVEPPPPPPTTGGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLTVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKAHKEEITPPPPLPPLDHGSRLSPFAQFFSFPQYSTSATQCKNSGNELGATAQNQWAAGDIEVTMVDSHANLKILSKKRPRQLLKMVAGFQSLRLTILHLNVTTLDQMVLYSVSIKVEEGCQLNTIDEIAAAVNQILLSIQEEAAFS | 317 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1468335 | 1469873 | - | evm.model.ptg000015l.243 | HCH4g0243 | 542487 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g0243 | 317 | SMART | finulus | 118 | 169 | IPR011598 | GO:0046983(InterPro) | |
| HCH4g0243 | 317 | Pfam | Helix-loop-helix DNA-binding domain | 113 | 164 | IPR011598 | GO:0046983(InterPro) | |
| HCH4g0243 | 317 | MobiDBLite | consensus disorder prediction | 78 | 92 | - | - | |
| HCH4g0243 | 317 | CDD | bHLH_AtFAMA_like | 115 | 174 | - | - | |
| HCH4g0243 | 317 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 112 | 163 | IPR011598 | GO:0046983(InterPro) | |
| HCH4g0243 | 317 | Gene3D | - | 97 | 176 | IPR036638 | GO:0046983(InterPro) | |
| HCH4g0243 | 317 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 112 | 183 | IPR036638 | GO:0046983(InterPro) | |
| HCH4g0243 | 317 | PANTHER | MAX DIMERIZATION, MAD | 62 | 307 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| HCH4g0243 | 317 | MobiDBLite | consensus disorder prediction | 59 | 109 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0828 | HCH-Chr10:9191465 | HCH4g0243 | HCH-Chr4:1468335 | 4.80E-65 | dispersed | |
| HCH4g0243 | HCH-Chr4:1468335 | HCH8g0136 | HCH-Chr8:5460207 | 6.20E-63 | dispersed | |
| HCH11g1295 | HCH-Chr11:44955817 | HCH4g0243 | HCH-Chr4:1468335 | 3.70E-24 | transposed | |
| HCH5g0263 | HCH-Chr5:1544480 | HCH4g0243 | HCH-Chr4:1468335 | 4.70E-55 | transposed | |
| HCH7g1171 | HCH-Chr7:44598974 | HCH4g0243 | HCH-Chr4:1468335 | 4.40E-32 | transposed | |
| HCH7g1424 | HCH-Chr7:46983964 | HCH4g0243 | HCH-Chr4:1468335 | 1.80E-41 | transposed | |
| HCH13g1213 | HCH-Chr13:39583525 | HCH4g0243 | HCH-Chr4:1468335 | 7.30E-44 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33407 | PF00010 | HLH | 9.60E-10 | No_clan | HCH | TF |
Pathway information