Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0254 ATGGAATTCGATGAGGACCCAGATGATGATATGGAAGAGATTCCGACGACCCAGCCGCCGTCGGGTTATGACTCAAGAGCAGAACCAGAGGGTGCTTCGGCACCGAGGAAAAGCGGTGCTAGTGGTTTTATTAGGTATAGAGAATGCTTGAAGAATCACGCAATCGGCATCGGCGGACACGCCGTAGACGGTTGCGGTGAATTCATGCCGGCTGGAGAAGACGGTAGTCTCGATGCACTAAAATGCGCCGCCTGTAACTGCCACCGGAATTTCCACAGGAAAGAAACTGACTCAGATCATCAGGGTTATTCCTATACCTACCACCATCAATTCTCTTCTTATCGTACGCCGCCACCGTCATCGGGTTACCTTTACCTAACGGCACCGCCTGCTCGGCCGCTCGCGTTGCCAGCGGCTTCAGGCGGTGGAAATACAGGTAGAGATGAAGACGATACGTCGAATCCGAGTAGCAGCGGTGGCGGTGGTGGAAGCGGAGGAAGTGGGATGAAAATGAAGAGATTTAGGACAAAATTTAGCCAAGAGCAGAAGGAGAAGATGTTAGGGTTTGCTGAGAAAGTAGGATGGACAATTCAGAAGCATGATGAAGCTGATGTTGAAAAGTTTTGTTCTGAGACTGGTGTTCGAAGGCAAGTTCTTAAGGTATGGATGCATAATAACAAACATACTCTTGGGAAGAAACCCTAA 705 49.5 MEFDEDPDDDMEEIPTTQPPSGYDSRAEPEGASAPRKSGASGFIRYRECLKNHAIGIGGHAVDGCGEFMPAGEDGSLDALKCAACNCHRNFHRKETDSDHQGYSYTYHHQFSSYRTPPPSSGYLYLTAPPARPLALPAASGGGNTGRDEDDTSNPSSSGGGGGSGGSGMKMKRFRTKFSQEQKEKMLGFAEKVGWTIQKHDEADVEKFCSETGVRRQVLKVWMHNNKHTLGKKP 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1570917 1571621 - evm.model.ptg000015l.254 HCH4g0254 542498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0254 234 NCBIfam homeobox domain, ZF-HD class 172 227 IPR006455 -
HCH4g0254 234 MobiDBLite consensus disorder prediction 134 170 - -
HCH4g0254 234 Gene3D - 156 232 - -
HCH4g0254 234 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
HCH4g0254 234 FunFam Zinc-finger homeodomain protein 2 163 232 - -
HCH4g0254 234 MobiDBLite consensus disorder prediction 1 39 - -
HCH4g0254 234 Pfam ZF-HD protein dimerisation region 44 96 IPR006456 -
HCH4g0254 234 MobiDBLite consensus disorder prediction 146 163 - -
HCH4g0254 234 SUPERFAMILY Homeodomain-like 157 232 IPR009057 -
HCH4g0254 234 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
HCH4g0254 234 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 25 230 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0573 HCH-Chr14:34602936 HCH4g0254 HCH-Chr4:1570917 1.60E-45 dispersed
HCH1g0163 HCH-Chr1:12945090 HCH4g0254 HCH-Chr4:1570917 1.50E-40 dispersed
HCH1g0927 HCH-Chr1:57583440 HCH4g0254 HCH-Chr4:1570917 1.90E-31 dispersed
HCH3g0010 HCH-Chr3:97960 HCH4g0254 HCH-Chr4:1570917 5.00E-28 dispersed
HCH3g0060 HCH-Chr3:352747 HCH4g0254 HCH-Chr4:1570917 1.20E-17 dispersed
HCH4g0254 HCH-Chr4:1570917 HCH4g0729 HCH-Chr4:4696492 1.70E-46 dispersed
HCH14g0459 HCH-Chr14:33591762 HCH4g0254 HCH-Chr4:1570917 2.00E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33408 PF04770 ZF-HD_dimer 4.90E-30 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0254 - - - 0.0