Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0254 ATGGAATTCGATGAGGACCCAGATGATGATATGGAAGAGATTCCGACGACCCAGCCGCCGTCGGGTTATGACTCAAGAGCAGAACCAGAGGGTGCTTCGGCACCGAGGAAAAGCGGTGCTAGTGGTTTTATTAGGTATAGAGAATGCTTGAAGAATCACGCAATCGGCATCGGCGGACACGCCGTAGACGGTTGCGGTGAATTCATGCCGGCTGGAGAAGACGGTAGTCTCGATGCACTAAAATGCGCCGCCTGTAACTGCCACCGGAATTTCCACAGGAAAGAAACTGACTCAGATCATCAGGGTTATTCCTATACCTACCACCATCAATTCTCTTCTTATCGTACGCCGCCACCGTCATCGGGTTACCTTTACCTAACGGCACCGCCTGCTCGGCCGCTCGCGTTGCCAGCGGCTTCAGGCGGTGGAAATACAGGTAGAGATGAAGACGATACGTCGAATCCGAGTAGCAGCGGTGGCGGTGGTGGAAGCGGAGGAAGTGGGATGAAAATGAAGAGATTTAGGACAAAATTTAGCCAAGAGCAGAAGGAGAAGATGTTAGGGTTTGCTGAGAAAGTAGGATGGACAATTCAGAAGCATGATGAAGCTGATGTTGAAAAGTTTTGTTCTGAGACTGGTGTTCGAAGGCAAGTTCTTAAGGTATGGATGCATAATAACAAACATACTCTTGGGAAGAAACCCTAA 705 49.5 MEFDEDPDDDMEEIPTTQPPSGYDSRAEPEGASAPRKSGASGFIRYRECLKNHAIGIGGHAVDGCGEFMPAGEDGSLDALKCAACNCHRNFHRKETDSDHQGYSYTYHHQFSSYRTPPPSSGYLYLTAPPARPLALPAASGGGNTGRDEDDTSNPSSSGGGGGSGGSGMKMKRFRTKFSQEQKEKMLGFAEKVGWTIQKHDEADVEKFCSETGVRRQVLKVWMHNNKHTLGKKP 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1570917 1571621 - evm.model.ptg000015l.254 HCH4g0254 542498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0254 234 NCBIfam homeobox domain, ZF-HD class 172 227 IPR006455 -
HCH4g0254 234 MobiDBLite consensus disorder prediction 134 170 - -
HCH4g0254 234 Gene3D - 156 232 - -
HCH4g0254 234 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
HCH4g0254 234 FunFam Zinc-finger homeodomain protein 2 163 232 - -
HCH4g0254 234 MobiDBLite consensus disorder prediction 1 39 - -
HCH4g0254 234 Pfam ZF-HD protein dimerisation region 44 96 IPR006456 -
HCH4g0254 234 MobiDBLite consensus disorder prediction 146 163 - -
HCH4g0254 234 SUPERFAMILY Homeodomain-like 157 232 IPR009057 -
HCH4g0254 234 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
HCH4g0254 234 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 25 230 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0254 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0573 HCH-Chr14:34602936 HCH4g0254 HCH-Chr4:1570917 1.60E-45 dispersed
HCH1g0163 HCH-Chr1:12945090 HCH4g0254 HCH-Chr4:1570917 1.50E-40 dispersed
HCH1g0927 HCH-Chr1:57583440 HCH4g0254 HCH-Chr4:1570917 1.90E-31 dispersed
HCH3g0010 HCH-Chr3:97960 HCH4g0254 HCH-Chr4:1570917 5.00E-28 dispersed
HCH3g0060 HCH-Chr3:352747 HCH4g0254 HCH-Chr4:1570917 1.20E-17 dispersed
HCH4g0254 HCH-Chr4:1570917 HCH4g0729 HCH-Chr4:4696492 1.70E-46 dispersed
HCH14g0459 HCH-Chr14:33591762 HCH4g0254 HCH-Chr4:1570917 2.00E-58 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0459 . 45 235 ZF-HD Transcription Factor Family AT5G65410 51.5 4.2e-47 185.3
HCH4g0254 . 5 230 ZF-HD Transcription Factor Family AT4G24660 54.2 7.5e-58 220.7
HCH4g0729 . 85 289 ZF-HD Transcription Factor Family AT4G24660 50.7 7.8e-47 184.1
HCH13g0736 . 3 267 ZF-HD Transcription Factor Family AT5G15210 52.5 1.2e-49 193.7
HCH9g0225 . 7 260 ZF-HD Transcription Factor Family AT5G15210 52.8 1.6e-46 183.3
HCH9g0225 . 1 263 ZF-HD Transcription Factor Family AT3G28920 66.3 3.2e-64 242.3
HCH13g0736 . 14 269 ZF-HD Transcription Factor Family AT3G28920 57.0 1.6e-55 213.4
HCH9g0225 . 22 270 ZF-HD Transcription Factor Family AT5G39760 63.2 7.3e-54 208.0
HCH13g0736 . 22 273 ZF-HD Transcription Factor Family AT5G39760 54.2 1.6e-48 190.3
HCH4g0254 . 5 230 ZF-HD Transcription Factor Family AT4G24660 54.2 7.5e-58 220.7
HCH4g0729 . 85 289 ZF-HD Transcription Factor Family AT4G24660 50.7 7.8e-47 184.1
HCH9g0225 . 22 270 ZF-HD Transcription Factor Family AT5G39760 63.2 7.3e-54 208.0
HCH13g0736 . 22 273 ZF-HD Transcription Factor Family AT5G39760 54.2 1.6e-48 190.3
HCH14g0459 . 45 235 ZF-HD Transcription Factor Family AT5G65410 51.5 4.2e-47 185.3
HCH13g0736 . 3 267 ZF-HD Transcription Factor Family AT5G15210 52.5 1.2e-49 193.7
HCH9g0225 . 7 260 ZF-HD Transcription Factor Family AT5G15210 52.8 1.6e-46 183.3
HCH9g0225 . 1 263 ZF-HD Transcription Factor Family AT3G28920 66.3 3.2e-64 242.3
HCH13g0736 . 14 269 ZF-HD Transcription Factor Family AT3G28920 57.0 1.6e-55 213.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33408 PF04770 ZF-HD_dimer 4.90E-30 No_clan HCH TF