Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0259 ATGGCACCAAGTTTTGACTGCGCAGTGTCAAATCTTCTATGTGCAGAAGACAATTGTATTTTCGACAATAACGATGATGATGATGATGATAGAAATGAAACTGTAGTGGTGGATGACTTTATAATGGCGCCTTGTTTTCATAGAAACAATCGGACCCATAATCGGATTCGGAGCCCCGGTACCGGAGATGGGTTTCCATTGATTAGTGATGAATGTTTGAATGAAATGGTTTTGAAAGAAAGTCAACACCTGCCCCTTGATGGGTACCTTAAGAAGTTGCAAAATGGAGATTTTGACATTGAAGCAAGAAGAGAAGCTATTGATTGGATTGGAAAGGTCAGTGCTCATTTCAATTTTGGACCTCTCTGTACATACTTAGCCGTAAACTATTTGGATCGATTCCTTTCCGCTTACGAGCTACCTAAAGGCAAAGCTTGGACAATGCAATTATTGGCTGTGGCTTGTTTATCTCTTGCAGCCAAACTGGAGGAGACTGAGATTCCACTGTCATTGGATTTACAGGTGGGTGGATCGAAATTTGTGTTCGAAGCCAAAACCATCCAGAGAATGGAGCTTTTAGTCTTGACCACATTGAGGTGGAGAATGCAAGCAGTTACCCCTTTCTCATTTATTGATTATTACCTTAAAAAGATTCATGATGACCACATCTCCCTTCAAGTTTCGATGGTTCGATCGATTCAATTAGTCTTAAACACCATTCAAGGGATCGACTTCTTGGAATTCAAACCTTCTGAAATCGCAGCAGCAGTAGCGATATCAGTCGCGGGAGAATCCCATTCAGTGGACCCTGATAGAGCAATTCCTCTTCTCATTCAGCAAGTCGAAATGGAGAGAGTTTTGAAATGCATTAAACTAATTAATGAGATGTCGTTAATCCGTGGGACTGCAAAGGACTCGAGAGTGTCGATCTCCGAGCCCCCGAGTCCGAGTAGGGTGTTAGATGTGGCATGCTTAAGCTATAAAAGCAATGATACAACAGTTGGGTCATGTGCAAATTCTTCTCATAACAGCTCAGATGCCAAGAGGAGGAGGCTTAACAGACCTTGTGAAGTGGGGCTATGA 1083 42.38 MAPSFDCAVSNLLCAEDNCIFDNNDDDDDDRNETVVVDDFIMAPCFHRNNRTHNRIRSPGTGDGFPLISDECLNEMVLKESQHLPLDGYLKKLQNGDFDIEARREAIDWIGKVSAHFNFGPLCTYLAVNYLDRFLSAYELPKGKAWTMQLLAVACLSLAAKLEETEIPLSLDLQVGGSKFVFEAKTIQRMELLVLTTLRWRMQAVTPFSFIDYYLKKIHDDHISLQVSMVRSIQLVLNTIQGIDFLEFKPSEIAAAVAISVAGESHSVDPDRAIPLLIQQVEMERVLKCIKLINEMSLIRGTAKDSRVSISEPPSPSRVLDVACLSYKSNDTTVGSCANSSHNSSDAKRRRLNRPCEVGL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1606933 1608758 - evm.model.ptg000015l.259 HCH4g0259 542503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0259 360 SUPERFAMILY Cyclin-like 66 202 IPR036915 -
HCH4g0259 360 Pfam Cyclin, N-terminal domain 73 202 IPR006671 -
HCH4g0259 360 FunFam D6-type cyclin 200 291 - -
HCH4g0259 360 SUPERFAMILY Cyclin-like 187 307 IPR036915 -
HCH4g0259 360 Gene3D - 86 203 - -
HCH4g0259 360 MobiDBLite consensus disorder prediction 333 360 - -
HCH4g0259 360 CDD CYCLIN_AtCycD-like_rpt2 205 293 - -
HCH4g0259 360 SMART cyclin_7 108 196 IPR013763 -
HCH4g0259 360 Pfam Cyclin, C-terminal domain 205 300 IPR004367 -
HCH4g0259 360 SMART Cyclin_C_2 205 328 IPR004367 -
HCH4g0259 360 FunFam D2/4-type cyclin 86 199 - -
HCH4g0259 360 PANTHER CYCLINS 71 266 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH4g0259 360 CDD CYCLIN_AtCycD-like_rpt1 102 200 - -
HCH4g0259 360 Gene3D - 73 291 - -
HCH4g0259 360 MobiDBLite consensus disorder prediction 344 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0922 HCH-Chr11:40454716 HCH4g0259 HCH-Chr4:1606933 3.30E-48 dispersed
HCH4g0259 HCH-Chr4:1606933 HCH4g0920 HCH-Chr4:5898673 9.20E-47 dispersed
HCH2g0781 HCH-Chr2:51483674 HCH4g0259 HCH-Chr4:1606933 3.00E-33 transposed
HCH13g1196 HCH-Chr13:39144535 HCH4g0259 HCH-Chr4:1606933 1.40E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0259 K18810 - csv:101216206 516.538