Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0262 ATGTCGCCTCTGGGTGTGCAACTATTCGTTACAGAACATCAAGTGATGATCGATAATGGCATAGTCCAAGTCACTTTATCGAACCCAGATGGAATTGTGACTGGAATCAGATATAATGGAATTGACAACTTGCTTGAAGTTCTTAACGACAAATCTAACAGAGGGTATTGGGATCTTGTGTGGAGCTCATCGGCGATCACCACTGGAGCATTCGATGTGATAAAGGGTACGAGTTTTAAGGTTATAATGGAAAATGAAGACCAAGTGGAGCTCTCTTTTACACGAAAATGGGATCTTTCCCTCGAGGGAAAGCTTGTACCTTTGGACATTGATAAAAGGTTTATAATGCTTCGAGGTTCGTCTGGGTTCTATTCTTATGCTATTTACCAACACTTGAAGGAATGGCCTGGTTTCAACCTCGGTGAAACGAGAATCGCCTTCAAACTAAGCAAAGACAAGTTTCACTATATGGCCATGGCAGACAACAGGCAGAGATTCATGCCGCTGCCAGATGACCGGTTGCCGCCGAGAGGCCGAGCCCTGGCCTATCCAGAGGCTGTCCTTCTTGTCGATCCTGTCGAATCTGAGTTCCGAGGAGAGGTGGACGATAAGTATCAATATTCATGCGATAACAAAGACAGCCGGGTCCATGGGTGGATATCCACCGACCCACCAGTCGGGTTCTGGCTAATCACTCCGAGCAATGAGTTCCGGTCCGGCGGACCTGTTAAACAGAACCTGACTTCTCACGTCGGTCCCACCACCCTCGCAGTTTTTATTAGCGCACATTATACGGGAGAGGATCTGGTGCCGAATATCGAAGCCGGTGAGGCGTGGAAGAAAGTATTCGGACCTGTTTTTATTTATCTCAATTCCACTTACGATGATGCTGATATTGACCCACTTCAGCTCTGGGAAGATGCCAAAACCCAGGCGACGTTGGAAGTCGAAAGTTGGCCCTATAGCTTTCCTGCGTCGGAAGATTTTCCAAAATCAGGTGAAAGGGGTAATATCAGTGGAAGACTATTAGTGAAGGATAGATACGTCAGTGAAGAATTAATACCAGCAAACGGTGCGTTTGTTGGCTTAGCTCCACCGGGAGATGTAGGATCATGGCAAAGAGAAAGTAAGGGTTACCAATTCTGGAGCAGAGCAGATGAAGGTGGATATTTTTCCATTAATGATGTAAGAACTGGGGACTATAATCTCTATGGGTGGGTCCCTGGTTTCATTGGAGACTATCATAATGATGTTCTTATCAACATTACTCAAGGTGGTTATACAGACATGGGTGATGTTGTGTATGAGGCTCCAAGAGAAGGGGATACATTATGGGAAATAGGAATACCTGATCGCTCAGCATCAGAGTTCTATATTCCAGATCCAAATCTCAACTATGTGAATAACCTTTATCTTAATCATCCTGACAGGTTTAGGCAATACGGTTTGTGGGAAAGATACTCAGAATTGTATCCTGATGAAGACTTAATATACACTGTTGGCCTTAGTGATTATACCAAAGATTGGTTCTTCTCTCAAGTTACCAGGAAGACAGAAAATGGAACATATCAAGGGACAACGTGGCAAGTCAAGTTTAAGCTGGACAGTGTGGGTGGGACAGGAACCTACAAGCTTCGAGTGGCATTGGCTTCTGCTACTCTCTCTGAATTGCAGATTCGGGTAAACAACCGAAATGAAAAGCCAGTGTTCTCGAGCGGACTGATTGGAAGGGACAATTCGATCGCTAGACATGGAATTCACGGGCTGTATTGGCTTTTTAACGTTGAAATTCAGGGGAATCGGTTGTTACTAGGAGACAATACCATCTTTTTCACGCAACCTAGAAGCATTGGTCCTTTCCAATCAATTATGTACGATTATATTCGTCTTGAAGCTCCTCAAACTTCTATTTTCTCCTGA 1920 44.48 MSPLGVQLFVTEHQVMIDNGIVQVTLSNPDGIVTGIRYNGIDNLLEVLNDKSNRGYWDLVWSSSAITTGAFDVIKGTSFKVIMENEDQVELSFTRKWDLSLEGKLVPLDIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGETRIAFKLSKDKFHYMAMADNRQRFMPLPDDRLPPRGRALAYPEAVLLVDPVESEFRGEVDDKYQYSCDNKDSRVHGWISTDPPVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYTGEDLVPNIEAGEAWKKVFGPVFIYLNSTYDDADIDPLQLWEDAKTQATLEVESWPYSFPASEDFPKSGERGNISGRLLVKDRYVSEELIPANGAFVGLAPPGDVGSWQRESKGYQFWSRADEGGYFSINDVRTGDYNLYGWVPGFIGDYHNDVLINITQGGYTDMGDVVYEAPREGDTLWEIGIPDRSASEFYIPDPNLNYVNNLYLNHPDRFRQYGLWERYSELYPDEDLIYTVGLSDYTKDWFFSQVTRKTENGTYQGTTWQVKFKLDSVGGTGTYKLRVALASATLSELQIRVNNRNEKPVFSSGLIGRDNSIARHGIHGLYWLFNVEIQGNRLLLGDNTIFFTQPRSIGPFQSIMYDYIRLEAPQTSIFS 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1643091 1647911 + evm.model.ptg000015l.262 HCH4g0262 542506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0262 639 Gene3D - 6 297 IPR014718 GO:0030246(InterPro)
HCH4g0262 639 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 634 IPR051850 -
HCH4g0262 639 Pfam Rhamnogalacturonate lyase family 6 201 IPR010325 -
HCH4g0262 639 Gene3D - 440 631 - -
HCH4g0262 639 CDD RGL4_N 14 299 - -
HCH4g0262 639 Pfam Polysaccharide lyase family 4, domain III 443 630 IPR029411 -
HCH4g0262 639 Pfam Polysaccharide lyase family 4, domain II 357 428 IPR029413 -
HCH4g0262 639 SUPERFAMILY Galactose mutarotase-like 14 292 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
HCH4g0262 639 CDD RGL4_C 445 631 - -
HCH4g0262 639 SUPERFAMILY Starch-binding domain-like 334 431 IPR013784 GO:0030246(InterPro)
HCH4g0262 639 CDD RGL4_M 334 432 IPR029413 -
HCH4g0262 639 SUPERFAMILY Galactose-binding domain-like 441 631 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0710 HCH-Chr12:4422117 HCH4g0262 HCH-Chr4:1643091 1.80E-287 dispersed
HCH14g0806 HCH-Chr14:36044308 HCH4g0262 HCH-Chr4:1643091 2.70E-198 transposed
HCH12g0709 HCH-Chr12:4407137 HCH4g0262 HCH-Chr4:1643091 6.10E-258 wgd
HCH14g0431 HCH-Chr14:33339770 HCH4g0262 HCH-Chr4:1643091 2.40E-216 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0262 K18195 - csv:101215720 1085.09