Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH4g0267 | ATGTACGGACAAATTCAAACCCTAACCATGGGTGACCAAATCGTCGCCTCCGATTCCGACTGCGGCGAGCCCTTAGATAATCGCTTTGTTCAATACGAAACTCATTCTCTCGATGACGGCGCTGGAGGAATCGGCCCCGTCATTGGCGATGTCAATCCCGATTCCGTTTATGCTTCCGCCGGGGACGTCGCTGATATGGCGGTTCAACGCGGGGACGGTACTAGCCAGCTCACACTTTCGTTCCGTGGCCAAGTCTATCTTTTTGATGCCGTCTCTCCTGAAAAGGTTCAAGCAGTATTATTGCTGTTAGGTGGATGTGAGCTATCTTCCGGTCCGCCAGGCGTGGATTTAGTAAATAATAATCAGAGGAGTGCTTTGGACCTACCCGGACGCAGTAGTCAACCACAGAGGGCGGCGTCCTTAAATAGGTTTCGGCAGAAAAGGAAAGAACGGTGTTTTGATAAGAAAGTTAGATATAGTGTTCGTCAAGAAGTGGCTCTCAGGATGCAACGCAACAAGGGACAGTTTACCTCTGCCAAGAAGCCTGACGGATCATATTGCCATGGTGTCCCAGAGTCGGGTCAAGATGAAAGTCCAGCAGAAATTTTATGTACAAATTGTGGCATAAGTTCATTGGCTACCCCAATGATGAGGCGGGGACCATCTGGGCCTAGATCGCTATGCAATGCCTGTGGACTTTTTTGGGCAAACCGGGGCACTTTAAGGGAGCTTTCAAAGAAAAACCAGGACCATCCTGTGACTCCAGCTATTCAATGTGAAGGCAATACCGCTAATGATTTGGACTGCGGACATGATACCCATGCGCACAGCAGTCTCGTTTCTTTCTCTAATGGTCGACGGTTAGGGCTTCGTTTTTCAAGCGTAGTTAGGGCTTTCGACGAATTAATGGCGGCGGCAAATCCTCAGCCTTTACAAGCGCGTCCCTTTCAAGAACACGTCCAAGTCCCGACAATGATCGGAGACGACGACGGTGAATATGAAGAAGGCGGCGGAGGCGGCGGCGACGTTATGGATGACGTCGACGAGGCTCATATGGCCTCGGTGAGTGCTGCAAATCACGGGCGAGTGATTATGGCGTCGAGAACTAGTGAGCTTACGCTCTCTTTTGAAGGCGAGGTTTATGTGTTCCCTGCGGTCACTCCTGAGAAGGTACAAGCTGTGCTCCTGCTTCTGGGAGGGCGTGATGTGCCAACTAGCGTACCTACAATTGAAGTACCGTATGATCATAATAACATGGGTCTGAGTGATACCCCGAAGCGGTCCAATTTATCACGGAGAATAGCCTCTCTGGTCAGATTTCGAGAAAAAAGGAAAGAGAGATGTTTTGACAAGAAAATTAGATACACTGTTCGGAAAGAGGTTGCTCAGAGGATGCATCGTAAGAATGGTCAGTTTGCATCTTTGAAAGAAAGCCCAGGTGCTTCCAGTTGGGAGTCAGCACATAGTTGCCTACAAGATGGTGCTCCTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAAAATAACACGCCTGCAATGCGACGTGGGCCTGCTGGACCAAGGACTTTATGCAATGCATGTGGGTTGATGTGGGCAAATAAGGGAACGTTGAGAGATCTCAGCAAGGGAGGGAGGAATACATCAATAGATCATTTGGAACCTGAAACCCCAATGGATGTCAAACCCACAATTATGGAGGGAGAGTTTTCGGGTAACCAGGATGAACATGGGACTCCCGAGGATCCTGGTAAAACTGTGACTGAAGGCTCCAGTAATCCGTCTGTTGACCCAGATGAGGATTTAAATGACACAACTGGCGACCTTACAAATTCCTTGCCCATGCAAATTGTTAATCTTCCAGCCGATGGTGATGAGCAGGAACCTGTAGTTGAACTTGTTAATCCTTCGGATACCGATATAGACATCCCCACTAATTTTGATTAG | 1959 | 48.55 | MYGQIQTLTMGDQIVASDSDCGEPLDNRFVQYETHSLDDGAGGIGPVIGDVNPDSVYASAGDVADMAVQRGDGTSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGPPGVDLVNNNQRSALDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKPDGSYCHGVPESGQDESPAEILCTNCGISSLATPMMRRGPSGPRSLCNACGLFWANRGTLRELSKKNQDHPVTPAIQCEGNTANDLDCGHDTHAHSSLVSFSNGRRLGLRFSSVVRAFDELMAAANPQPLQARPFQEHVQVPTMIGDDDGEYEEGGGGGGDVMDDVDEAHMASVSAANHGRVIMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTIEVPYDHNNMGLSDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGASSWESAHSCLQDGAPRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNTSIDHLEPETPMDVKPTIMEGEFSGNQDEHGTPEDPGKTVTEGSSNPSVDPDEDLNDTTGDLTNSLPMQIVNLPADGDEQEPVVELVNPSDTDIDIPTNFD | 652 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1704653 | 1714716 | - | evm.model.ptg000015l.267 | HCH4g0267 | 542511 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH4g0267 | 652 | ProSitePatterns | GATA-type zinc finger domain. | 204 | 231 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH4g0267 | 652 | SMART | GATA_3 | 198 | 251 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH4g0267 | 652 | SMART | GATA_3 | 499 | 552 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH4g0267 | 652 | ProSiteProfiles | GATA-type zinc finger domain profile. | 204 | 260 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH4g0267 | 652 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 199 | 249 | - | - | |
HCH4g0267 | 652 | ProSiteProfiles | Tify domain profile. | 365 | 400 | IPR010399 | - | |
HCH4g0267 | 652 | MobiDBLite | consensus disorder prediction | 542 | 618 | - | - | |
HCH4g0267 | 652 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 501 | 549 | - | - | |
HCH4g0267 | 652 | CDD | ZnF_GATA | 504 | 548 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH4g0267 | 652 | Pfam | CCT motif | 137 | 179 | IPR010402 | GO:0005515(InterPro) | |
HCH4g0267 | 652 | Pfam | CCT motif | 433 | 474 | IPR010402 | GO:0005515(InterPro) | |
HCH4g0267 | 652 | MobiDBLite | consensus disorder prediction | 589 | 618 | - | - | |
HCH4g0267 | 652 | Pfam | GATA zinc finger | 204 | 240 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH4g0267 | 652 | Pfam | GATA zinc finger | 505 | 541 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH4g0267 | 652 | ProSiteProfiles | GATA-type zinc finger domain profile. | 499 | 547 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH4g0267 | 652 | ProSiteProfiles | CCT domain profile. | 137 | 179 | IPR010402 | GO:0005515(InterPro) | |
HCH4g0267 | 652 | ProSitePatterns | GATA-type zinc finger domain. | 505 | 532 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH4g0267 | 652 | Gene3D | - | 195 | 253 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
HCH4g0267 | 652 | CDD | ZnF_GATA | 204 | 250 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH4g0267 | 652 | Pfam | tify domain | 73 | 104 | IPR010399 | - | |
HCH4g0267 | 652 | Pfam | tify domain | 368 | 399 | IPR010399 | - | |
HCH4g0267 | 652 | ProSiteProfiles | Tify domain profile. | 70 | 105 | IPR010399 | - | |
HCH4g0267 | 652 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 318 | 587 | IPR045280 | GO:0006355(InterPro) | |
HCH4g0267 | 652 | ProSiteProfiles | CCT domain profile. | 433 | 475 | IPR010402 | GO:0005515(InterPro) | |
HCH4g0267 | 652 | Gene3D | - | 501 | 551 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
HCH4g0267 | 652 | SMART | tify_2 | 365 | 400 | IPR010399 | - | |
HCH4g0267 | 652 | SMART | tify_2 | 70 | 105 | IPR010399 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0267 | HCH-Chr4:1704653 | HCH7g0821 | HCH-Chr7:16555480 | 2.40E-61 | dispersed | |
HCH4g0267 | HCH-Chr4:1704653 | HCH8g1283 | HCH-Chr8:47985896 | 6.90E-08 | transposed | |
HCH4g0267 | HCH-Chr4:1704653 | HCH3g0080 | HCH-Chr3:455789 | 6.90E-08 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33409 | PF06203 | CCT | 3.00E-13 | CL0281 | HCH | TF |
Pathway information
