Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0267 ATGTACGGACAAATTCAAACCCTAACCATGGGTGACCAAATCGTCGCCTCCGATTCCGACTGCGGCGAGCCCTTAGATAATCGCTTTGTTCAATACGAAACTCATTCTCTCGATGACGGCGCTGGAGGAATCGGCCCCGTCATTGGCGATGTCAATCCCGATTCCGTTTATGCTTCCGCCGGGGACGTCGCTGATATGGCGGTTCAACGCGGGGACGGTACTAGCCAGCTCACACTTTCGTTCCGTGGCCAAGTCTATCTTTTTGATGCCGTCTCTCCTGAAAAGGTTCAAGCAGTATTATTGCTGTTAGGTGGATGTGAGCTATCTTCCGGTCCGCCAGGCGTGGATTTAGTAAATAATAATCAGAGGAGTGCTTTGGACCTACCCGGACGCAGTAGTCAACCACAGAGGGCGGCGTCCTTAAATAGGTTTCGGCAGAAAAGGAAAGAACGGTGTTTTGATAAGAAAGTTAGATATAGTGTTCGTCAAGAAGTGGCTCTCAGGATGCAACGCAACAAGGGACAGTTTACCTCTGCCAAGAAGCCTGACGGATCATATTGCCATGGTGTCCCAGAGTCGGGTCAAGATGAAAGTCCAGCAGAAATTTTATGTACAAATTGTGGCATAAGTTCATTGGCTACCCCAATGATGAGGCGGGGACCATCTGGGCCTAGATCGCTATGCAATGCCTGTGGACTTTTTTGGGCAAACCGGGGCACTTTAAGGGAGCTTTCAAAGAAAAACCAGGACCATCCTGTGACTCCAGCTATTCAATGTGAAGGCAATACCGCTAATGATTTGGACTGCGGACATGATACCCATGCGCACAGCAGTCTCGTTTCTTTCTCTAATGGTCGACGGTTAGGGCTTCGTTTTTCAAGCGTAGTTAGGGCTTTCGACGAATTAATGGCGGCGGCAAATCCTCAGCCTTTACAAGCGCGTCCCTTTCAAGAACACGTCCAAGTCCCGACAATGATCGGAGACGACGACGGTGAATATGAAGAAGGCGGCGGAGGCGGCGGCGACGTTATGGATGACGTCGACGAGGCTCATATGGCCTCGGTGAGTGCTGCAAATCACGGGCGAGTGATTATGGCGTCGAGAACTAGTGAGCTTACGCTCTCTTTTGAAGGCGAGGTTTATGTGTTCCCTGCGGTCACTCCTGAGAAGGTACAAGCTGTGCTCCTGCTTCTGGGAGGGCGTGATGTGCCAACTAGCGTACCTACAATTGAAGTACCGTATGATCATAATAACATGGGTCTGAGTGATACCCCGAAGCGGTCCAATTTATCACGGAGAATAGCCTCTCTGGTCAGATTTCGAGAAAAAAGGAAAGAGAGATGTTTTGACAAGAAAATTAGATACACTGTTCGGAAAGAGGTTGCTCAGAGGATGCATCGTAAGAATGGTCAGTTTGCATCTTTGAAAGAAAGCCCAGGTGCTTCCAGTTGGGAGTCAGCACATAGTTGCCTACAAGATGGTGCTCCTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAAAATAACACGCCTGCAATGCGACGTGGGCCTGCTGGACCAAGGACTTTATGCAATGCATGTGGGTTGATGTGGGCAAATAAGGGAACGTTGAGAGATCTCAGCAAGGGAGGGAGGAATACATCAATAGATCATTTGGAACCTGAAACCCCAATGGATGTCAAACCCACAATTATGGAGGGAGAGTTTTCGGGTAACCAGGATGAACATGGGACTCCCGAGGATCCTGGTAAAACTGTGACTGAAGGCTCCAGTAATCCGTCTGTTGACCCAGATGAGGATTTAAATGACACAACTGGCGACCTTACAAATTCCTTGCCCATGCAAATTGTTAATCTTCCAGCCGATGGTGATGAGCAGGAACCTGTAGTTGAACTTGTTAATCCTTCGGATACCGATATAGACATCCCCACTAATTTTGATTAG 1959 48.55 MYGQIQTLTMGDQIVASDSDCGEPLDNRFVQYETHSLDDGAGGIGPVIGDVNPDSVYASAGDVADMAVQRGDGTSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGPPGVDLVNNNQRSALDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKPDGSYCHGVPESGQDESPAEILCTNCGISSLATPMMRRGPSGPRSLCNACGLFWANRGTLRELSKKNQDHPVTPAIQCEGNTANDLDCGHDTHAHSSLVSFSNGRRLGLRFSSVVRAFDELMAAANPQPLQARPFQEHVQVPTMIGDDDGEYEEGGGGGGDVMDDVDEAHMASVSAANHGRVIMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTIEVPYDHNNMGLSDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGASSWESAHSCLQDGAPRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNTSIDHLEPETPMDVKPTIMEGEFSGNQDEHGTPEDPGKTVTEGSSNPSVDPDEDLNDTTGDLTNSLPMQIVNLPADGDEQEPVVELVNPSDTDIDIPTNFD 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1704653 1714716 - evm.model.ptg000015l.267 HCH4g0267 542511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0267 652 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 SMART GATA_3 198 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 SMART GATA_3 499 552 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 ProSiteProfiles GATA-type zinc finger domain profile. 204 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 249 - -
HCH4g0267 652 ProSiteProfiles Tify domain profile. 365 400 IPR010399 -
HCH4g0267 652 MobiDBLite consensus disorder prediction 542 618 - -
HCH4g0267 652 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 501 549 - -
HCH4g0267 652 CDD ZnF_GATA 504 548 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 Pfam CCT motif 137 179 IPR010402 GO:0005515(InterPro)
HCH4g0267 652 Pfam CCT motif 433 474 IPR010402 GO:0005515(InterPro)
HCH4g0267 652 MobiDBLite consensus disorder prediction 589 618 - -
HCH4g0267 652 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 Pfam GATA zinc finger 505 541 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 ProSiteProfiles GATA-type zinc finger domain profile. 499 547 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 ProSiteProfiles CCT domain profile. 137 179 IPR010402 GO:0005515(InterPro)
HCH4g0267 652 ProSitePatterns GATA-type zinc finger domain. 505 532 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 Gene3D - 195 253 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH4g0267 652 CDD ZnF_GATA 204 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 Pfam tify domain 73 104 IPR010399 -
HCH4g0267 652 Pfam tify domain 368 399 IPR010399 -
HCH4g0267 652 ProSiteProfiles Tify domain profile. 70 105 IPR010399 -
HCH4g0267 652 PANTHER GATA TRANSCRIPTION FACTOR 28 318 587 IPR045280 GO:0006355(InterPro)
HCH4g0267 652 ProSiteProfiles CCT domain profile. 433 475 IPR010402 GO:0005515(InterPro)
HCH4g0267 652 Gene3D - 501 551 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH4g0267 652 SMART tify_2 365 400 IPR010399 -
HCH4g0267 652 SMART tify_2 70 105 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0267 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0267 HCH-Chr4:1704653 HCH7g0821 HCH-Chr7:16555480 2.40E-61 dispersed
HCH4g0267 HCH-Chr4:1704653 HCH8g1283 HCH-Chr8:47985896 6.90E-08 transposed
HCH4g0267 HCH-Chr4:1704653 HCH3g0080 HCH-Chr3:455789 6.90E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1575 . 1 231 Tify Gene Family AT3G21175 56.7 1.7e-59 226.1
HCH4g0267 . 52 285 Tify Gene Family AT4G24470 50.9 3.8e-60 228.8
HCH4g1575 . 74 274 Tify Gene Family AT4G24470 53.5 4.1e-46 182.2
HCH4g1575 . 1 288 Tify Gene Family AT1G51600 60.5 2.4e-88 322.4
HCH4g0267 . 23 246 Tify Gene Family AT1G51600 51.8 8.0e-52 201.1
HCH7g0821 . 92 288 Tify Gene Family AT1G51600 57.6 1.4e-51 200.3
HCH4g0267 . 52 285 Tify Gene Family AT4G24470 50.9 3.8e-60 228.8
HCH4g1575 . 74 274 Tify Gene Family AT4G24470 53.5 4.1e-46 182.2
HCH4g1575 . 1 288 Tify Gene Family AT1G51600 60.5 2.4e-88 322.4
HCH4g0267 . 23 246 Tify Gene Family AT1G51600 51.8 8.0e-52 201.1
HCH7g0821 . 92 288 Tify Gene Family AT1G51600 57.6 1.4e-51 200.3
HCH4g1575 . 1 231 Tify Gene Family AT3G21175 56.7 1.7e-59 226.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33409 PF06203 CCT 3.00E-13 CL0281 HCH TF