Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0267 ATGTACGGACAAATTCAAACCCTAACCATGGGTGACCAAATCGTCGCCTCCGATTCCGACTGCGGCGAGCCCTTAGATAATCGCTTTGTTCAATACGAAACTCATTCTCTCGATGACGGCGCTGGAGGAATCGGCCCCGTCATTGGCGATGTCAATCCCGATTCCGTTTATGCTTCCGCCGGGGACGTCGCTGATATGGCGGTTCAACGCGGGGACGGTACTAGCCAGCTCACACTTTCGTTCCGTGGCCAAGTCTATCTTTTTGATGCCGTCTCTCCTGAAAAGGTTCAAGCAGTATTATTGCTGTTAGGTGGATGTGAGCTATCTTCCGGTCCGCCAGGCGTGGATTTAGTAAATAATAATCAGAGGAGTGCTTTGGACCTACCCGGACGCAGTAGTCAACCACAGAGGGCGGCGTCCTTAAATAGGTTTCGGCAGAAAAGGAAAGAACGGTGTTTTGATAAGAAAGTTAGATATAGTGTTCGTCAAGAAGTGGCTCTCAGGATGCAACGCAACAAGGGACAGTTTACCTCTGCCAAGAAGCCTGACGGATCATATTGCCATGGTGTCCCAGAGTCGGGTCAAGATGAAAGTCCAGCAGAAATTTTATGTACAAATTGTGGCATAAGTTCATTGGCTACCCCAATGATGAGGCGGGGACCATCTGGGCCTAGATCGCTATGCAATGCCTGTGGACTTTTTTGGGCAAACCGGGGCACTTTAAGGGAGCTTTCAAAGAAAAACCAGGACCATCCTGTGACTCCAGCTATTCAATGTGAAGGCAATACCGCTAATGATTTGGACTGCGGACATGATACCCATGCGCACAGCAGTCTCGTTTCTTTCTCTAATGGTCGACGGTTAGGGCTTCGTTTTTCAAGCGTAGTTAGGGCTTTCGACGAATTAATGGCGGCGGCAAATCCTCAGCCTTTACAAGCGCGTCCCTTTCAAGAACACGTCCAAGTCCCGACAATGATCGGAGACGACGACGGTGAATATGAAGAAGGCGGCGGAGGCGGCGGCGACGTTATGGATGACGTCGACGAGGCTCATATGGCCTCGGTGAGTGCTGCAAATCACGGGCGAGTGATTATGGCGTCGAGAACTAGTGAGCTTACGCTCTCTTTTGAAGGCGAGGTTTATGTGTTCCCTGCGGTCACTCCTGAGAAGGTACAAGCTGTGCTCCTGCTTCTGGGAGGGCGTGATGTGCCAACTAGCGTACCTACAATTGAAGTACCGTATGATCATAATAACATGGGTCTGAGTGATACCCCGAAGCGGTCCAATTTATCACGGAGAATAGCCTCTCTGGTCAGATTTCGAGAAAAAAGGAAAGAGAGATGTTTTGACAAGAAAATTAGATACACTGTTCGGAAAGAGGTTGCTCAGAGGATGCATCGTAAGAATGGTCAGTTTGCATCTTTGAAAGAAAGCCCAGGTGCTTCCAGTTGGGAGTCAGCACATAGTTGCCTACAAGATGGTGCTCCTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAAAATAACACGCCTGCAATGCGACGTGGGCCTGCTGGACCAAGGACTTTATGCAATGCATGTGGGTTGATGTGGGCAAATAAGGGAACGTTGAGAGATCTCAGCAAGGGAGGGAGGAATACATCAATAGATCATTTGGAACCTGAAACCCCAATGGATGTCAAACCCACAATTATGGAGGGAGAGTTTTCGGGTAACCAGGATGAACATGGGACTCCCGAGGATCCTGGTAAAACTGTGACTGAAGGCTCCAGTAATCCGTCTGTTGACCCAGATGAGGATTTAAATGACACAACTGGCGACCTTACAAATTCCTTGCCCATGCAAATTGTTAATCTTCCAGCCGATGGTGATGAGCAGGAACCTGTAGTTGAACTTGTTAATCCTTCGGATACCGATATAGACATCCCCACTAATTTTGATTAG 1959 48.55 MYGQIQTLTMGDQIVASDSDCGEPLDNRFVQYETHSLDDGAGGIGPVIGDVNPDSVYASAGDVADMAVQRGDGTSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGPPGVDLVNNNQRSALDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKPDGSYCHGVPESGQDESPAEILCTNCGISSLATPMMRRGPSGPRSLCNACGLFWANRGTLRELSKKNQDHPVTPAIQCEGNTANDLDCGHDTHAHSSLVSFSNGRRLGLRFSSVVRAFDELMAAANPQPLQARPFQEHVQVPTMIGDDDGEYEEGGGGGGDVMDDVDEAHMASVSAANHGRVIMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTSVPTIEVPYDHNNMGLSDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGASSWESAHSCLQDGAPRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNTSIDHLEPETPMDVKPTIMEGEFSGNQDEHGTPEDPGKTVTEGSSNPSVDPDEDLNDTTGDLTNSLPMQIVNLPADGDEQEPVVELVNPSDTDIDIPTNFD 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1704653 1714716 - evm.model.ptg000015l.267 HCH4g0267 542511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0267 652 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 SMART GATA_3 198 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 SMART GATA_3 499 552 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 ProSiteProfiles GATA-type zinc finger domain profile. 204 260 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 249 - -
HCH4g0267 652 ProSiteProfiles Tify domain profile. 365 400 IPR010399 -
HCH4g0267 652 MobiDBLite consensus disorder prediction 542 618 - -
HCH4g0267 652 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 501 549 - -
HCH4g0267 652 CDD ZnF_GATA 504 548 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 Pfam CCT motif 137 179 IPR010402 GO:0005515(InterPro)
HCH4g0267 652 Pfam CCT motif 433 474 IPR010402 GO:0005515(InterPro)
HCH4g0267 652 MobiDBLite consensus disorder prediction 589 618 - -
HCH4g0267 652 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 Pfam GATA zinc finger 505 541 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 ProSiteProfiles GATA-type zinc finger domain profile. 499 547 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 ProSiteProfiles CCT domain profile. 137 179 IPR010402 GO:0005515(InterPro)
HCH4g0267 652 ProSitePatterns GATA-type zinc finger domain. 505 532 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 Gene3D - 195 253 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH4g0267 652 CDD ZnF_GATA 204 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH4g0267 652 Pfam tify domain 73 104 IPR010399 -
HCH4g0267 652 Pfam tify domain 368 399 IPR010399 -
HCH4g0267 652 ProSiteProfiles Tify domain profile. 70 105 IPR010399 -
HCH4g0267 652 PANTHER GATA TRANSCRIPTION FACTOR 28 318 587 IPR045280 GO:0006355(InterPro)
HCH4g0267 652 ProSiteProfiles CCT domain profile. 433 475 IPR010402 GO:0005515(InterPro)
HCH4g0267 652 Gene3D - 501 551 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
HCH4g0267 652 SMART tify_2 365 400 IPR010399 -
HCH4g0267 652 SMART tify_2 70 105 IPR010399 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0267 HCH-Chr4:1704653 HCH7g0821 HCH-Chr7:16555480 2.40E-61 dispersed
HCH4g0267 HCH-Chr4:1704653 HCH8g1283 HCH-Chr8:47985896 6.90E-08 transposed
HCH4g0267 HCH-Chr4:1704653 HCH3g0080 HCH-Chr3:455789 6.90E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33409 PF06203 CCT 3.00E-13 CL0281 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0267 - - - 0.0