Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0275 ATGGTTCATCCGGGTTCTACACCAGTTTCTCATAAATTGGGGATTCATAGTGTTTATGGACGCAACAATTTACATATTAGTGTTAAGGGAAAGACTCGTCTCCATCTCGTTACTATCAATCCTACATCACATGGTTTGAGGCATGATGCTTGGAGTCTTCAGCTCTTAAGCAGTGTGAGTCGCTCGATATATCCCATGTCTTCCAAAGCGAATGTTTTTGTGTGTCGGTCTGTACTGGAATCAAGTGGAGGATCTGGATCTGCTGTTTTAAAATCTGCTGCTGTGGTTTTGACTAGATCTTATGATGCTTTACGTGGAAATCATCTGTTACTTAAATTGATTCCAGCAGTTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATAGATCAGATGGTAGTTGGAAGAAAAGTAGTACTCATTATGTTATGACCTCCTACATTCAGCCTTTACTGCTATGGACTGGAGCAATACTTATCTGCAGAGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGCCAAGCTGTCAAGCAACGACTTTTGAATTTTGTCCAATCATTGTCCACCGTTCTCGCGTTTGCTTATTGTATATCAAGCTTGATTCAACAAGTACAAAAATTCGTTACTGAATCAAATGACTCAAATGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTATACTGCAGTCTGGGTTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGGTCACAGCTGGGGGCCTCGGTACTGTGTTGCTTACCCTTGCTGGTCGTGAGATATTTACTAATTTTCTTTCGAGTGTAATGATCCATGCAACCAGGCCTTTTGTGTTAAATGAATGGATTCAGACAAAGATTGAGGGATATGAAGTCTCTGGAACAGTTGAGCATGTGGGTTGGTGGTCTCCAACCATTATCCGAGGTGATGATCGTGAAGCAGTCCATATTCCGAACCACAAATTTACTGTTAGTGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGTATCAAGACCCATCTTGCCATCAGCCACTTGGATGTTAATAAGATTAATTATATTGTAGCTGATATGCGCAAAGTTTTGGCCAAGAACCCTCAAGTAGAACAACAACGGTTACACCGTAGAGTTTTTCTGGATAACATCAATCCTGAAAATCAGGCTTTAATGATTATGATTTCTTGTTTCGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAAGCAATTCTGTTGGATCTCCTCAGGGTGGTTAGCCATCATAGGGCTCGGCTTGCCACTCCCATTCGTACTGTTCAGAAAATATATAGTGAAGCTGATTTGGAGAACATACCATTTTCTGATACCTTGTATTCTCGTACTGGAGCAGCTACTAACCGTCCTTTGCTACTTATTGAGCCATCTTATAAAGTCAATGGTGATGATAAATCCAAGGTCTCTAGTCGTCCCACTCGTTCAAACGAAGAAAAGGATGCAAAGCAAGAGGCAGTCTCAACATCAGGAACAAAGGCACCTGACACAGTTGGATCAGCATCAAATCCTGATATGAAAACAGATGATAAAAAACCAACTTCTTCGTCTGGTGCTAATCCTAAATCGTCAACAGGGTCGGTAGCCAACCCTCAGACCCAGAATCAGGCGCTTGATACATCAGAACAAAGTAGCTTTGAAAGGCCAATAAGTAATGAAACAAAAGGAGAAAAGAAAGATTCCACCGGACTGAATTCCAAGGATAATACATCAAGAGGGACTCCACTCAAAAGGCCCGTAGCTTCTGAATCTGGCAGTGGGAAAGTGGATACTCCTTCGCCAAGCTTGCAGAATAAACAAGATGGTGGTGACAAGCCACCTGCATCAACATCATCAATGTCCAGGCCATTAGAAGAGAATATCGTCCTGGGAGTTGCTTTGGAGGGCTCGAAAAGAACGTTGCCCATTAATGAAGATTTGGATCCATCTCCGTTTCACTCTCCCACTGATTCGAAAGAAATGTCCACCCAGAGGAATGGGAGTGAGTTTCCTCCCAGTAGCAAGGATGGCCAGATGCCTGCAGTTCCCGGTGCTACAAAAAACGATTGA 2151 42.63 MVHPGSTPVSHKLGIHSVYGRNNLHISVKGKTRLHLVTINPTSHGLRHDAWSLQLLSSVSRSIYPMSSKANVFVCRSVLESSGGSGSAVLKSAAVVLTRSYDALRGNHLLLKLIPAVCVIAFAAWGVGPLMRLGRILFLHRSDGSWKKSSTHYVMTSYIQPLLLWTGAILICRALDPVVLPSVASQAVKQRLLNFVQSLSTVLAFAYCISSLIQQVQKFVTESNDSNDARNMGFDFAGKAVYTAVWVAALSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSVVRNLSQKTHWRIKTHLAISHLDVNKINYIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALMIMISCFVKTSRFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADLENIPFSDTLYSRTGAATNRPLLLIEPSYKVNGDDKSKVSSRPTRSNEEKDAKQEAVSTSGTKAPDTVGSASNPDMKTDDKKPTSSSGANPKSSTGSVANPQTQNQALDTSEQSSFERPISNETKGEKKDSTGLNSKDNTSRGTPLKRPVASESGSGKVDTPSPSLQNKQDGGDKPPASTSSMSRPLEENIVLGVALEGSKRTLPINEDLDPSPFHSPTDSKEMSTQRNGSEFPPSSKDGQMPAVPGATKND 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1762551 1767569 + evm.model.ptg000015l.275 HCH4g0275 542519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0275 716 MobiDBLite consensus disorder prediction 521 538 - -
HCH4g0275 716 Pfam Mechanosensitive ion channel, beta-domain 282 352 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g0275 716 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 700 IPR045042 -
HCH4g0275 716 MobiDBLite consensus disorder prediction 682 700 - -
HCH4g0275 716 Gene3D - 196 296 - -
HCH4g0275 716 MobiDBLite consensus disorder prediction 585 599 - -
HCH4g0275 716 MobiDBLite consensus disorder prediction 620 651 - -
HCH4g0275 716 Gene3D - 298 353 IPR023408 -
HCH4g0275 716 MobiDBLite consensus disorder prediction 496 716 - -
HCH4g0275 716 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
HCH4g0275 716 MobiDBLite consensus disorder prediction 496 520 - -
HCH4g0275 716 MobiDBLite consensus disorder prediction 547 584 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0771 HCH-Chr11:37272987 HCH4g0275 HCH-Chr4:1762551 1.90E-200 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0275 K22047 - csv:101213477 1129.78