Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0275 ATGGTTCATCCGGGTTCTACACCAGTTTCTCATAAATTGGGGATTCATAGTGTTTATGGACGCAACAATTTACATATTAGTGTTAAGGGAAAGACTCGTCTCCATCTCGTTACTATCAATCCTACATCACATGGTTTGAGGCATGATGCTTGGAGTCTTCAGCTCTTAAGCAGTGTGAGTCGCTCGATATATCCCATGTCTTCCAAAGCGAATGTTTTTGTGTGTCGGTCTGTACTGGAATCAAGTGGAGGATCTGGATCTGCTGTTTTAAAATCTGCTGCTGTGGTTTTGACTAGATCTTATGATGCTTTACGTGGAAATCATCTGTTACTTAAATTGATTCCAGCAGTTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATAGATCAGATGGTAGTTGGAAGAAAAGTAGTACTCATTATGTTATGACCTCCTACATTCAGCCTTTACTGCTATGGACTGGAGCAATACTTATCTGCAGAGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGCCAAGCTGTCAAGCAACGACTTTTGAATTTTGTCCAATCATTGTCCACCGTTCTCGCGTTTGCTTATTGTATATCAAGCTTGATTCAACAAGTACAAAAATTCGTTACTGAATCAAATGACTCAAATGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTATACTGCAGTCTGGGTTGCTGCTCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGGTCACAGCTGGGGGCCTCGGTACTGTGTTGCTTACCCTTGCTGGTCGTGAGATATTTACTAATTTTCTTTCGAGTGTAATGATCCATGCAACCAGGCCTTTTGTGTTAAATGAATGGATTCAGACAAAGATTGAGGGATATGAAGTCTCTGGAACAGTTGAGCATGTGGGTTGGTGGTCTCCAACCATTATCCGAGGTGATGATCGTGAAGCAGTCCATATTCCGAACCACAAATTTACTGTTAGTGTTGTGAGGAATCTTAGCCAGAAGACTCATTGGCGTATCAAGACCCATCTTGCCATCAGCCACTTGGATGTTAATAAGATTAATTATATTGTAGCTGATATGCGCAAAGTTTTGGCCAAGAACCCTCAAGTAGAACAACAACGGTTACACCGTAGAGTTTTTCTGGATAACATCAATCCTGAAAATCAGGCTTTAATGATTATGATTTCTTGTTTCGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAAGCAATTCTGTTGGATCTCCTCAGGGTGGTTAGCCATCATAGGGCTCGGCTTGCCACTCCCATTCGTACTGTTCAGAAAATATATAGTGAAGCTGATTTGGAGAACATACCATTTTCTGATACCTTGTATTCTCGTACTGGAGCAGCTACTAACCGTCCTTTGCTACTTATTGAGCCATCTTATAAAGTCAATGGTGATGATAAATCCAAGGTCTCTAGTCGTCCCACTCGTTCAAACGAAGAAAAGGATGCAAAGCAAGAGGCAGTCTCAACATCAGGAACAAAGGCACCTGACACAGTTGGATCAGCATCAAATCCTGATATGAAAACAGATGATAAAAAACCAACTTCTTCGTCTGGTGCTAATCCTAAATCGTCAACAGGGTCGGTAGCCAACCCTCAGACCCAGAATCAGGCGCTTGATACATCAGAACAAAGTAGCTTTGAAAGGCCAATAAGTAATGAAACAAAAGGAGAAAAGAAAGATTCCACCGGACTGAATTCCAAGGATAATACATCAAGAGGGACTCCACTCAAAAGGCCCGTAGCTTCTGAATCTGGCAGTGGGAAAGTGGATACTCCTTCGCCAAGCTTGCAGAATAAACAAGATGGTGGTGACAAGCCACCTGCATCAACATCATCAATGTCCAGGCCATTAGAAGAGAATATCGTCCTGGGAGTTGCTTTGGAGGGCTCGAAAAGAACGTTGCCCATTAATGAAGATTTGGATCCATCTCCGTTTCACTCTCCCACTGATTCGAAAGAAATGTCCACCCAGAGGAATGGGAGTGAGTTTCCTCCCAGTAGCAAGGATGGCCAGATGCCTGCAGTTCCCGGTGCTACAAAAAACGATTGA 2151 42.63 MVHPGSTPVSHKLGIHSVYGRNNLHISVKGKTRLHLVTINPTSHGLRHDAWSLQLLSSVSRSIYPMSSKANVFVCRSVLESSGGSGSAVLKSAAVVLTRSYDALRGNHLLLKLIPAVCVIAFAAWGVGPLMRLGRILFLHRSDGSWKKSSTHYVMTSYIQPLLLWTGAILICRALDPVVLPSVASQAVKQRLLNFVQSLSTVLAFAYCISSLIQQVQKFVTESNDSNDARNMGFDFAGKAVYTAVWVAALSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSVVRNLSQKTHWRIKTHLAISHLDVNKINYIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALMIMISCFVKTSRFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADLENIPFSDTLYSRTGAATNRPLLLIEPSYKVNGDDKSKVSSRPTRSNEEKDAKQEAVSTSGTKAPDTVGSASNPDMKTDDKKPTSSSGANPKSSTGSVANPQTQNQALDTSEQSSFERPISNETKGEKKDSTGLNSKDNTSRGTPLKRPVASESGSGKVDTPSPSLQNKQDGGDKPPASTSSMSRPLEENIVLGVALEGSKRTLPINEDLDPSPFHSPTDSKEMSTQRNGSEFPPSSKDGQMPAVPGATKND 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1762551 1767569 + evm.model.ptg000015l.275 HCH4g0275 542519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0275 716 MobiDBLite consensus disorder prediction 521 538 - -
HCH4g0275 716 Pfam Mechanosensitive ion channel, beta-domain 282 352 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH4g0275 716 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 700 IPR045042 -
HCH4g0275 716 MobiDBLite consensus disorder prediction 682 700 - -
HCH4g0275 716 Gene3D - 196 296 - -
HCH4g0275 716 MobiDBLite consensus disorder prediction 585 599 - -
HCH4g0275 716 MobiDBLite consensus disorder prediction 620 651 - -
HCH4g0275 716 Gene3D - 298 353 IPR023408 -
HCH4g0275 716 MobiDBLite consensus disorder prediction 496 716 - -
HCH4g0275 716 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
HCH4g0275 716 MobiDBLite consensus disorder prediction 496 520 - -
HCH4g0275 716 MobiDBLite consensus disorder prediction 547 584 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0275 K22047 - - csv:101213477 1129.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0771 HCH-Chr11:37272987 HCH4g0275 HCH-Chr4:1762551 1.90E-200 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1640 . 69 534 Mechanosensitive Ion Channel Family AT4G00290 60.7 1.8e-154 542.7
HCH11g0771 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 55.7 7.4e-199 690.6
HCH4g0275 . 31 692 Mechanosensitive Ion Channel Family AT5G10490 57.5 3.2e-194 675.2
HCH4g0275 . 8 688 Mechanosensitive Ion Channel Family AT1G58200 57.7 7.7e-204 707.2
HCH11g0771 . 49 696 Mechanosensitive Ion Channel Family AT1G58200 51.6 3.0e-171 599.0
HCH2g0582 . 44 911 Mechanosensitive Ion Channel Family AT1G53470 55.3 3.9e-256 881.3
HCH7g0440 . 73 847 Mechanosensitive Ion Channel Family AT1G53470 55.3 3.3e-239 825.1
HCH2g0582 . 44 906 Mechanosensitive Ion Channel Family AT3G14810 54.9 7.1e-247 850.5
HCH7g0440 . 57 846 Mechanosensitive Ion Channel Family AT3G14810 53.9 5.6e-228 787.7
HCH2g0582 . 50 911 Mechanosensitive Ion Channel Family AT1G78610 58.5 7.1e-279 956.8
HCH7g0440 . 78 847 Mechanosensitive Ion Channel Family AT1G78610 60.1 7.4e-260 893.6
HCH7g0440 . 53 851 Mechanosensitive Ion Channel Family AT2G17000 55.1 7.5e-233 803.9
HCH2g0582 . 209 907 Mechanosensitive Ion Channel Family AT2G17000 60.0 9.2e-231 797.0
HCH2g0582 . 1 648 Mechanosensitive Ion Channel Family AT2G17010 50.1 2.1e-161 566.2
HCH12g0472 . 57 727 Mechanosensitive Ion Channel Family AT5G19520 56.2 8.5e-204 707.2
HCH12g0472 . 48 727 Mechanosensitive Ion Channel Family AT5G12080 60.0 5.8e-221 764.2
HCH8g0615 . 33 725 Mechanosensitive Ion Channel Family AT5G12080 53.4 8.7e-201 697.2
HCH6g1377 . 102 673 Mechanosensitive Ion Channel Family AT5G12080 50.3 2.8e-151 532.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71