Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0278 ATGGCGAGAGAAAAGATAAAGATAAAGAAGATTGATAATCTAACGGCGAGGCAAGTGACATTTTCGAAGAGAAGAAGAGGGCTTTTTAAGAAAGCTGAGGAGTTGTCTGTTCTTTGTGATGCCGAGGTTGCTCTTATCATCTTCTCCGCTACTGGAAAGCTCTTTCAGTATTCTAGTTCCAGCACGAAGGATGTAATTGGGAGATATCATTTGCACTCTAATAACATTGGAAAATTGGGCCAACCATCCCTCGAGCTACAGCTTGAAAACAGCAATCATGTCAGAATGAGCAAAGAAGTTTCAGATAAGAGCCATCAATTGAGGCAGATGAGGGGAGAGAATCTCCATGGATTGAATATTGAAGATTTGAAGCAATTGGAAAGAGTGCTTGAAATAGGCCTCACTCGAGTTCTTGACACCAAGGAGAAAAGGATTATGGGGGAGATTGATGAGCTTAAGCTTAAGGGAGCTAAGTTGATTGAAGAAAACAAGAAACTGAAACAGAAGATGTTAATGTTATCCACTGAAACGATGCCGCTTCTTGCGGAATCAGACATTGTTATGGTGGAAGAAGGCGTTTCATCGGAGTCTGCCGTTAATGTCTGCAGCTGCAATAGTGGTCCTCCCGTCGACGATGACAGCTCCGACACCTCTCTCAAACTAGGGCTTCCTTGCCCCAACTAA 684 43.13 MAREKIKIKKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFQYSSSSTKDVIGRYHLHSNNIGKLGQPSLELQLENSNHVRMSKEVSDKSHQLRQMRGENLHGLNIEDLKQLERVLEIGLTRVLDTKEKRIMGEIDELKLKGAKLIEENKKLKQKMLMLSTETMPLLAESDIVMVEEGVSSESAVNVCSCNSGPPVDDDSSDTSLKLGLPCPN 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1786307 1789355 - evm.model.ptg000015l.278 HCH4g0278 542522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0278 227 Gene3D - 13 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0278 227 Coils Coil 149 169 - -
HCH4g0278 227 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH4g0278 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0278 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0278 227 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH4g0278 227 FunFam Transcription factor, MADS-box 13 83 - -
HCH4g0278 227 Pfam K-box region 89 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH4g0278 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0278 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0278 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0278 227 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0278 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0278 227 MobiDBLite consensus disorder prediction 206 227 - -
HCH4g0278 227 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH4g0278 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0962 HCH-Chr11:41028650 HCH4g0278 HCH-Chr4:1786307 1.60E-46 dispersed
HCH4g0278 HCH-Chr4:1786307 HCH4g1682 HCH-Chr4:18444783 8.40E-38 dispersed
HCH12g0712 HCH-Chr12:4438182 HCH4g0278 HCH-Chr4:1786307 1.30E-28 wgd
HCH13g1176 HCH-Chr13:38373318 HCH4g0278 HCH-Chr4:1786307 8.00E-25 wgd
HCH14g0447 HCH-Chr14:33491842 HCH4g0278 HCH-Chr4:1786307 1.50E-66 wgd
HCH14g0430 HCH-Chr14:33325126 HCH4g0278 HCH-Chr4:1786307 1.10E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33411 PF01486 K-box 7.20E-14 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0278 - - - 0.0