Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0281 ATGAAAGGAGAATTTACACAACCACAACCCAAATCCAGAACTCCTGATATGCTTTCCAAATTCCATCACCACCATCAACAAATTTCCCTTCCTTTTGAAGACGACGACACCAGCCGCTCCTCCGCCGCTACCGCTACCGCTGGCGACGGTTCCACAATCGAACTAGTCCGACGCCCAAGAGGCCGTCCACCGGGTTCCAAAAACAAACCCAAACCACCCGTTGTCATAACCCGTGACCCGGAACCCGCTATGCGCCCTTACGTTCTAGAAGTATCCGGAGGAAACGATGTCGTTGAAACCATTAACCGGTTTTCTCGTCGTAAAAACATCGGACTTTGTGTTCTAAACGGTTCTGGCACCGTCGCTAACGTCACTCTTCGTCAGCCCTCTACTACCCCAGGGGCAACAGTGACTTTTCACGGCCGGTTTGAAATTCTATCTATTTGTGCTACGTTCCTTCCTCAAACAACGCCGTACCCAGTCCCGAATGGTTTTTCCATTTCCCTCGCCGGACCTCAGGGACAAATCGTCGGTGGGTTAGTCGCCGGCGCGTTGATTGCGGCGGGTACTGTGTTTATTGTCGCTTCGTCTTTTACGAACCCTTTATATCATCGGTTACCTGATGAAGAAGAGGATAAGAATTTAGGCGGTGGTGAGGTTAGTTCTCCCCGTGTTTCCGGCGGCGGAGATAGCAGTGGGCATGCGATGGTGGAATCGTGTGGAATGCCGATGTATAGTTGTCATGCACCTTCCGATGTGATTTGGGCACCGACGGCGAGACAACCGCCGCCATCTCATCCGCCGTACTGA 810 52.1 MKGEFTQPQPKSRTPDMLSKFHHHHQQISLPFEDDDTSRSSAATATAGDGSTIELVRRPRGRPPGSKNKPKPPVVITRDPEPAMRPYVLEVSGGNDVVETINRFSRRKNIGLCVLNGSGTVANVTLRQPSTTPGATVTFHGRFEILSICATFLPQTTPYPVPNGFSISLAGPQGQIVGGLVAGALIAAGTVFIVASSFTNPLYHRLPDEEEDKNLGGGEVSSPRVSGGGDSSGHAMVESCGMPMYSCHAPSDVIWAPTARQPPPSHPPY 269
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 1807341 1808150 + evm.model.ptg000015l.281 HCH4g0281 542525
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0281 269 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 214 - -
HCH4g0281 269 MobiDBLite consensus disorder prediction 33 48 - -
HCH4g0281 269 PIRSF ESCAROLA 4 260 IPR014476 GO:0003680(InterPro)
HCH4g0281 269 ProSiteProfiles PPC domain profile profile. 81 219 IPR005175 -
HCH4g0281 269 MobiDBLite consensus disorder prediction 207 235 - -
HCH4g0281 269 CDD DUF296 85 198 IPR005175 -
HCH4g0281 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 239 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH4g0281 269 Gene3D - 84 215 - -
HCH4g0281 269 FunFam AT-hook motif nuclear-localized protein 85 217 - -
HCH4g0281 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 199 IPR005175 -
HCH4g0281 269 MobiDBLite consensus disorder prediction 1 79 - -
HCH4g0281 269 MobiDBLite consensus disorder prediction 16 32 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0281 HCH-Chr4:1807341 HCH5g0428 HCH-Chr5:2860572 4.30E-49 dispersed
HCH8g0392 HCH-Chr8:35478028 HCH4g0281 HCH-Chr4:1807341 2.50E-39 transposed
HCH12g0696 HCH-Chr12:4263390 HCH4g0281 HCH-Chr4:1807341 1.40E-84 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0281 - - - 0.0