Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g0281 | ATGAAAGGAGAATTTACACAACCACAACCCAAATCCAGAACTCCTGATATGCTTTCCAAATTCCATCACCACCATCAACAAATTTCCCTTCCTTTTGAAGACGACGACACCAGCCGCTCCTCCGCCGCTACCGCTACCGCTGGCGACGGTTCCACAATCGAACTAGTCCGACGCCCAAGAGGCCGTCCACCGGGTTCCAAAAACAAACCCAAACCACCCGTTGTCATAACCCGTGACCCGGAACCCGCTATGCGCCCTTACGTTCTAGAAGTATCCGGAGGAAACGATGTCGTTGAAACCATTAACCGGTTTTCTCGTCGTAAAAACATCGGACTTTGTGTTCTAAACGGTTCTGGCACCGTCGCTAACGTCACTCTTCGTCAGCCCTCTACTACCCCAGGGGCAACAGTGACTTTTCACGGCCGGTTTGAAATTCTATCTATTTGTGCTACGTTCCTTCCTCAAACAACGCCGTACCCAGTCCCGAATGGTTTTTCCATTTCCCTCGCCGGACCTCAGGGACAAATCGTCGGTGGGTTAGTCGCCGGCGCGTTGATTGCGGCGGGTACTGTGTTTATTGTCGCTTCGTCTTTTACGAACCCTTTATATCATCGGTTACCTGATGAAGAAGAGGATAAGAATTTAGGCGGTGGTGAGGTTAGTTCTCCCCGTGTTTCCGGCGGCGGAGATAGCAGTGGGCATGCGATGGTGGAATCGTGTGGAATGCCGATGTATAGTTGTCATGCACCTTCCGATGTGATTTGGGCACCGACGGCGAGACAACCGCCGCCATCTCATCCGCCGTACTGA | 810 | 52.1 | MKGEFTQPQPKSRTPDMLSKFHHHHQQISLPFEDDDTSRSSAATATAGDGSTIELVRRPRGRPPGSKNKPKPPVVITRDPEPAMRPYVLEVSGGNDVVETINRFSRRKNIGLCVLNGSGTVANVTLRQPSTTPGATVTFHGRFEILSICATFLPQTTPYPVPNGFSISLAGPQGQIVGGLVAGALIAAGTVFIVASSFTNPLYHRLPDEEEDKNLGGGEVSSPRVSGGGDSSGHAMVESCGMPMYSCHAPSDVIWAPTARQPPPSHPPY | 269 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1807341 | 1808150 | + | evm.model.ptg000015l.281 | HCH4g0281 | 542525 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g0281 | 269 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 83 | 214 | - | - | |
| HCH4g0281 | 269 | MobiDBLite | consensus disorder prediction | 33 | 48 | - | - | |
| HCH4g0281 | 269 | PIRSF | ESCAROLA | 4 | 260 | IPR014476 | GO:0003680(InterPro) | |
| HCH4g0281 | 269 | ProSiteProfiles | PPC domain profile profile. | 81 | 219 | IPR005175 | - | |
| HCH4g0281 | 269 | MobiDBLite | consensus disorder prediction | 207 | 235 | - | - | |
| HCH4g0281 | 269 | CDD | DUF296 | 85 | 198 | IPR005175 | - | |
| HCH4g0281 | 269 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 33 | 239 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
| HCH4g0281 | 269 | Gene3D | - | 84 | 215 | - | - | |
| HCH4g0281 | 269 | FunFam | AT-hook motif nuclear-localized protein | 85 | 217 | - | - | |
| HCH4g0281 | 269 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 85 | 199 | IPR005175 | - | |
| HCH4g0281 | 269 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
| HCH4g0281 | 269 | MobiDBLite | consensus disorder prediction | 16 | 32 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH4g0281 | HCH-Chr4:1807341 | HCH5g0428 | HCH-Chr5:2860572 | 4.30E-49 | dispersed | |
| HCH8g0392 | HCH-Chr8:35478028 | HCH4g0281 | HCH-Chr4:1807341 | 2.50E-39 | transposed | |
| HCH12g0696 | HCH-Chr12:4263390 | HCH4g0281 | HCH-Chr4:1807341 | 1.40E-84 | wgd |
Pathway information