Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0290 ATGGCTTCCACAGTCCCCGACGGCCTAACCAGAGACCAATACGTATACCTAGCGAAACTCTCCGAACAAGCCGAACGCTATGAAGAAATGGTTCAATTCATGCAAAAACTCGTCCTCGGCTCAACTCCGACTTCCGAGCTTTCAATCGAAGAACGCAATCTCCTTTCCGTCGCTTACAAGAACGTAATCGGATCACTACGAGCCGCTTGGAGAATCGTTTCTTCAATTGAGCAAAAAGAAGAAAGCCGTAAGAATGAAGATCATGTTGTTCTTGTTAAGGAATATAGGTCAAAAGTTGAGTCTGAGCTTTCTGTGATTTGTGCTAGTATTTTAGAGTTATTGGATTCGAATCTTATTCCTTCGGCTTCTTCTAGTGAATCGAAAGTGTTTTATTTGAAGATGAAGGGAGATTATCATAGGTATTTGGCCGAGTTTAAAGTTGGAGATGAGAGGAAATCTGCTGCGGAAGATACTATGTTGGCTTATAGGGCTGCTCAGGATGTTGCAATTGCGGATCTTGCACCCACTCATCCGATAAGGCTGGGGCTGGCACTCAATTTCTCTGTGTTTTACTTCGAGATTTTGAATCAGTCTGATAAAGCATGTAGTATGGCCAAGGAGGCATTTGAGGAAGCCATTGCTGAGCTGGACACTTTAGGTGAAGAATCATACAAGGACAGCACCCTCATCATGCAACTATTGAGGGACAACCTCACTCTCTGGACTTCAGATGCGCAGGACCAGTTAGATGAGTCATAG 759 44.01 MASTVPDGLTRDQYVYLAKLSEQAERYEEMVQFMQKLVLGSTPTSELSIEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEDHVVLVKEYRSKVESELSVICASILELLDSNLIPSASSSESKVFYLKMKGDYHRYLAEFKVGDERKSAAEDTMLAYRAAQDVAIADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDAQDQLDES 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1864433 1866961 + evm.model.ptg000015l.290 HCH4g0290 542534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0290 252 FunFam 14-3-3 protein epsilon 8 252 - -
HCH4g0290 252 PIRSF 14-3-3 7 252 IPR000308 -
HCH4g0290 252 SUPERFAMILY 14-3-3 protein 10 244 IPR036815 -
HCH4g0290 252 PANTHER 14-3-3 PROTEIN 11 247 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
HCH4g0290 252 Coils Coil 17 37 - -
HCH4g0290 252 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
HCH4g0290 252 PRINTS 14-3-3 protein zeta signature 161 187 IPR000308 -
HCH4g0290 252 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
HCH4g0290 252 PRINTS 14-3-3 protein zeta signature 188 214 IPR000308 -
HCH4g0290 252 PRINTS 14-3-3 protein zeta signature 215 244 IPR000308 -
HCH4g0290 252 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
HCH4g0290 252 ProSitePatterns 14-3-3 proteins signature 2. 224 243 IPR023409 -
HCH4g0290 252 SMART 1433_4 11 251 IPR023410 -
HCH4g0290 252 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
HCH4g0290 252 Pfam 14-3-3 protein 17 242 IPR023410 -
HCH4g0290 252 Gene3D - 3 252 IPR036815 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0290 K06630 - - csv:101222827 461.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0229 HCH-Chr4:1363839 HCH4g0290 HCH-Chr4:1864433 6.40E-98 dispersed
HCH4g0290 HCH-Chr4:1864433 HCH9g0347 HCH-Chr9:2161383 1.10E-102 dispersed
HCH12g0689 HCH-Chr12:4217141 HCH4g0290 HCH-Chr4:1864433 2.70E-125 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH12g0248 . 6 243 14-3-3 family AT4G09000 91.6 5.6e-120 427.6
HCH4g0229 . 5 243 14-3-3 family AT4G09000 90.0 2.3e-118 422.2
HCH9g0347 . 6 241 14-3-3 family AT4G09000 86.4 5.6e-112 401.0
HCH12g0689 . 12 247 14-3-3 family AT4G09000 76.7 5.8e-101 364.4
HCH4g0290 . 11 246 14-3-3 family AT4G09000 75.0 6.0e-98 354.4
HCH7g0108 . 4 238 14-3-3 family AT4G09000 71.7 6.4e-92 334.3
HCH4g0146 . 4 239 14-3-3 family AT4G09000 72.7 1.1e-91 333.6
HCH1g0880 . 4 239 14-3-3 family AT4G09000 71.0 6.0e-90 327.8
HCH12g0259 . 5 236 14-3-3 family AT4G09000 72.6 3.0e-89 325.5
HCH4g0218 . 5 236 14-3-3 family AT4G09000 69.2 6.2e-87 317.8
HCH12g0248 . 6 262 14-3-3 family AT1G78300 92.2 9.1e-129 456.4
HCH4g0229 . 7 262 14-3-3 family AT1G78300 89.1 1.0e-124 443.0
HCH9g0347 . 6 253 14-3-3 family AT1G78300 87.9 4.2e-118 421.0
HCH12g0689 . 12 248 14-3-3 family AT1G78300 77.2 9.5e-102 366.7
HCH4g0290 . 11 247 14-3-3 family AT1G78300 75.5 3.4e-99 358.2
HCH4g0146 . 8 257 14-3-3 family AT1G78300 69.8 4.0e-92 334.7
HCH7g0108 . 7 244 14-3-3 family AT1G78300 71.3 5.2e-92 334.3
HCH1g0880 . 8 255 14-3-3 family AT1G78300 70.0 2.6e-91 332.0
HCH12g0259 . 1 245 14-3-3 family AT1G78300 68.8 3.7e-90 328.2
HCH4g0218 . 1 245 14-3-3 family AT1G78300 66.8 6.0e-88 320.9
HCH9g0347 . 6 259 14-3-3 family AT5G38480 89.0 3.6e-122 434.5
HCH4g0229 . 7 253 14-3-3 family AT5G38480 85.0 4.8e-114 407.5
HCH12g0248 . 7 254 14-3-3 family AT5G38480 84.7 1.8e-113 405.6
HCH12g0689 . 11 252 14-3-3 family AT5G38480 74.0 2.8e-98 355.1
HCH4g0290 . 10 251 14-3-3 family AT5G38480 74.0 1.4e-97 352.8
HCH1g0880 . 8 245 14-3-3 family AT5G38480 73.8 3.0e-92 335.1
HCH7g0108 . 7 247 14-3-3 family AT5G38480 71.6 3.9e-92 334.7
HCH4g0146 . 8 255 14-3-3 family AT5G38480 71.2 6.7e-92 334.0
HCH4g0218 . 5 249 14-3-3 family AT5G38480 69.6 6.3e-90 327.4
HCH12g0259 . 5 247 14-3-3 family AT5G38480 71.4 8.2e-90 327.0
HCH12g0248 . 5 262 14-3-3 family AT1G35160 80.1 1.4e-120 429.5
HCH4g0229 . 4 243 14-3-3 family AT1G35160 89.2 4.8e-118 421.0
HCH9g0347 . 6 240 14-3-3 family AT1G35160 86.4 1.2e-111 399.8
HCH12g0689 . 12 247 14-3-3 family AT1G35160 76.3 2.0e-100 362.5
HCH4g0290 . 11 246 14-3-3 family AT1G35160 74.6 9.5e-98 353.6
HCH4g0146 . 8 239 14-3-3 family AT1G35160 73.9 1.7e-91 332.8
HCH7g0108 . 2 237 14-3-3 family AT1G35160 70.6 1.1e-90 330.1
HCH1g0880 . 8 239 14-3-3 family AT1G35160 72.6 2.5e-90 328.9
HCH12g0259 . 5 236 14-3-3 family AT1G35160 72.6 2.1e-89 325.9
HCH4g0218 . 5 236 14-3-3 family AT1G35160 68.8 5.8e-87 317.8
HCH9g0347 . 5 254 14-3-3 family AT5G16050 85.6 5.4e-116 414.1
HCH4g0229 . 4 254 14-3-3 family AT5G16050 78.1 3.1e-108 388.3
HCH12g0248 . 3 253 14-3-3 family AT5G16050 78.9 7.0e-108 387.1
HCH12g0689 . 11 249 14-3-3 family AT5G16050 70.3 1.1e-92 336.7
HCH4g0290 . 10 248 14-3-3 family AT5G16050 70.3 2.4e-92 335.5
HCH7g0108 . 1 246 14-3-3 family AT5G16050 65.5 1.4e-84 309.7
HCH1g0880 . 3 246 14-3-3 family AT5G16050 65.4 1.9e-84 309.3
HCH4g0146 . 3 261 14-3-3 family AT5G16050 64.0 1.9e-84 309.3
HCH12g0259 . 5 245 14-3-3 family AT5G16050 67.1 9.2e-84 307.0
HCH4g0218 . 2 245 14-3-3 family AT5G16050 65.0 6.0e-83 304.3
HCH12g0689 . 10 247 14-3-3 family AT5G10450 87.0 1.5e-113 406.0
HCH4g0290 . 9 246 14-3-3 family AT5G10450 85.3 2.1e-112 402.1
HCH4g0229 . 4 252 14-3-3 family AT5G10450 77.2 2.5e-105 378.6
HCH12g0248 . 3 252 14-3-3 family AT5G10450 76.1 4.3e-105 377.9
HCH9g0347 . 7 251 14-3-3 family AT5G10450 76.4 1.8e-103 372.5
HCH7g0108 . 1 238 14-3-3 family AT5G10450 66.8 2.0e-86 315.8
HCH12g0259 . 5 236 14-3-3 family AT5G10450 67.7 8.5e-85 310.5
HCH4g0146 . 3 239 14-3-3 family AT5G10450 66.3 5.5e-84 307.8
HCH1g0880 . 3 239 14-3-3 family AT5G10450 64.6 2.1e-83 305.8
HCH4g0218 . 5 236 14-3-3 family AT5G10450 65.1 8.0e-83 303.9
HCH9g0347 . 4 261 14-3-3 family AT3G02520 90.3 8.7e-127 449.9
HCH12g0248 . 6 254 14-3-3 family AT3G02520 86.0 2.8e-117 418.3
HCH4g0229 . 7 253 14-3-3 family AT3G02520 85.5 6.3e-117 417.2
HCH12g0689 . 11 249 14-3-3 family AT3G02520 74.9 3.1e-100 361.7
HCH4g0290 . 10 248 14-3-3 family AT3G02520 74.9 9.1e-100 360.1
HCH4g0146 . 8 257 14-3-3 family AT3G02520 69.0 1.8e-92 335.9
HCH1g0880 . 8 256 14-3-3 family AT3G02520 68.9 7.0e-92 334.0
HCH12g0259 . 1 241 14-3-3 family AT3G02520 72.0 1.2e-91 333.2
HCH7g0108 . 4 238 14-3-3 family AT3G02520 72.6 2.6e-91 332.0
HCH4g0218 . 1 241 14-3-3 family AT3G02520 68.7 7.2e-89 323.9
HCH12g0689 . 10 247 14-3-3 family AT5G65430 87.0 5.7e-115 410.6
HCH4g0290 . 9 246 14-3-3 family AT5G65430 86.6 4.9e-114 407.5
HCH12g0248 . 3 243 14-3-3 family AT5G65430 78.5 1.6e-104 375.9
HCH4g0229 . 4 243 14-3-3 family AT5G65430 79.7 2.0e-104 375.6
HCH9g0347 . 7 241 14-3-3 family AT5G65430 79.7 7.8e-104 373.6
HCH7g0108 . 1 238 14-3-3 family AT5G65430 69.3 1.2e-88 323.2
HCH12g0259 . 5 236 14-3-3 family AT5G65430 69.4 3.3e-86 315.1
HCH4g0146 . 8 239 14-3-3 family AT5G65430 69.4 2.8e-85 312.0
HCH1g0880 . 8 239 14-3-3 family AT5G65430 68.1 8.1e-85 310.5
HCH4g0218 . 5 236 14-3-3 family AT5G65430 66.8 2.4e-84 308.9
HCH7g0108 . 1 261 14-3-3 family AT2G42590 81.0 1.1e-116 416.4
HCH1g0880 . 6 258 14-3-3 family AT2G42590 74.8 1.4e-103 372.9
HCH4g0146 . 6 253 14-3-3 family AT2G42590 76.2 1.4e-103 372.9
HCH4g0218 . 3 242 14-3-3 family AT2G42590 75.4 3.5e-102 368.2
HCH12g0259 . 3 242 14-3-3 family AT2G42590 77.1 5.9e-102 367.5
HCH12g0248 . 3 249 14-3-3 family AT2G42590 69.6 4.3e-92 334.7
HCH4g0229 . 9 249 14-3-3 family AT2G42590 70.5 9.5e-92 333.6
HCH9g0347 . 8 248 14-3-3 family AT2G42590 73.0 1.2e-91 333.2
HCH12g0689 . 12 249 14-3-3 family AT2G42590 66.4 1.2e-83 306.6
HCH4g0290 . 8 248 14-3-3 family AT2G42590 65.6 2.3e-82 302.4
HCH7g0108 . 6 242 14-3-3 family AT1G22300 78.5 1.4e-102 369.4
HCH1g0880 . 5 244 14-3-3 family AT1G22300 77.5 9.2e-102 366.7
HCH4g0146 . 5 244 14-3-3 family AT1G22300 76.7 4.6e-101 364.4
HCH4g0218 . 1 241 14-3-3 family AT1G22300 76.8 4.6e-101 364.4
HCH12g0259 . 1 241 14-3-3 family AT1G22300 77.2 2.3e-100 362.1
HCH9g0347 . 4 246 14-3-3 family AT1G22300 70.0 5.6e-91 330.9
HCH12g0248 . 9 247 14-3-3 family AT1G22300 70.3 2.0e-88 322.4
HCH4g0229 . 9 247 14-3-3 family AT1G22300 69.9 2.0e-88 322.4
HCH12g0689 . 12 249 14-3-3 family AT1G22300 64.7 4.4e-80 294.7
HCH4g0290 . 11 248 14-3-3 family AT1G22300 63.0 2.4e-78 288.9
HCH4g0218 . 1 252 14-3-3 family AT1G34760 78.2 8.1e-106 380.2
HCH4g0146 . 5 247 14-3-3 family AT1G34760 79.4 3.4e-104 374.8
HCH7g0108 . 6 243 14-3-3 family AT1G34760 81.5 3.4e-104 374.8
HCH1g0880 . 5 247 14-3-3 family AT1G34760 79.4 3.7e-103 371.3
HCH12g0259 . 1 245 14-3-3 family AT1G34760 79.2 5.4e-102 367.5
HCH4g0229 . 9 246 14-3-3 family AT1G34760 71.8 8.1e-90 327.0
HCH9g0347 . 4 250 14-3-3 family AT1G34760 69.6 9.0e-89 323.6
HCH12g0248 . 13 246 14-3-3 family AT1G34760 72.6 1.5e-88 322.8
HCH12g0689 . 16 248 14-3-3 family AT1G34760 64.8 1.7e-79 292.7
HCH4g0290 . 15 247 14-3-3 family AT1G34760 65.7 3.2e-78 288.5
HCH4g0146 . 2 254 14-3-3 family AT1G26480 84.2 2.2e-117 418.7
HCH1g0880 . 2 254 14-3-3 family AT1G26480 84.6 7.0e-116 413.7
HCH7g0108 . 3 242 14-3-3 family AT1G26480 80.4 2.3e-106 382.1
HCH12g0259 . 3 242 14-3-3 family AT1G26480 78.3 2.6e-102 368.6
HCH4g0218 . 2 242 14-3-3 family AT1G26480 75.5 3.7e-101 364.8
HCH4g0229 . 9 261 14-3-3 family AT1G26480 72.8 2.6e-94 342.0
HCH12g0248 . 5 251 14-3-3 family AT1G26480 73.0 1.1e-92 336.7
HCH9g0347 . 5 256 14-3-3 family AT1G26480 72.0 1.2e-91 333.2
HCH12g0689 . 12 246 14-3-3 family AT1G26480 66.4 1.9e-81 299.3
HCH4g0290 . 11 244 14-3-3 family AT1G26480 66.7 1.6e-80 296.2
HCH1g0880 . 5 237 14-3-3 family AT1G78220 52.6 5.7e-64 241.1
HCH7g0108 . 6 236 14-3-3 family AT1G78220 51.3 1.4e-62 236.5
HCH4g0146 . 5 237 14-3-3 family AT1G78220 50.4 1.8e-62 236.1
HCH12g0259 . 1 234 14-3-3 family AT1G78220 50.2 2.0e-61 232.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003275 3 1 2 3 3 1 2 2 2 2 1 1 2 1 2 1 1 4 2 1 2 2 1 1 0 1 1 2 1 0 48