Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0290 ATGGCTTCCACAGTCCCCGACGGCCTAACCAGAGACCAATACGTATACCTAGCGAAACTCTCCGAACAAGCCGAACGCTATGAAGAAATGGTTCAATTCATGCAAAAACTCGTCCTCGGCTCAACTCCGACTTCCGAGCTTTCAATCGAAGAACGCAATCTCCTTTCCGTCGCTTACAAGAACGTAATCGGATCACTACGAGCCGCTTGGAGAATCGTTTCTTCAATTGAGCAAAAAGAAGAAAGCCGTAAGAATGAAGATCATGTTGTTCTTGTTAAGGAATATAGGTCAAAAGTTGAGTCTGAGCTTTCTGTGATTTGTGCTAGTATTTTAGAGTTATTGGATTCGAATCTTATTCCTTCGGCTTCTTCTAGTGAATCGAAAGTGTTTTATTTGAAGATGAAGGGAGATTATCATAGGTATTTGGCCGAGTTTAAAGTTGGAGATGAGAGGAAATCTGCTGCGGAAGATACTATGTTGGCTTATAGGGCTGCTCAGGATGTTGCAATTGCGGATCTTGCACCCACTCATCCGATAAGGCTGGGGCTGGCACTCAATTTCTCTGTGTTTTACTTCGAGATTTTGAATCAGTCTGATAAAGCATGTAGTATGGCCAAGGAGGCATTTGAGGAAGCCATTGCTGAGCTGGACACTTTAGGTGAAGAATCATACAAGGACAGCACCCTCATCATGCAACTATTGAGGGACAACCTCACTCTCTGGACTTCAGATGCGCAGGACCAGTTAGATGAGTCATAG 759 44.01 MASTVPDGLTRDQYVYLAKLSEQAERYEEMVQFMQKLVLGSTPTSELSIEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEDHVVLVKEYRSKVESELSVICASILELLDSNLIPSASSSESKVFYLKMKGDYHRYLAEFKVGDERKSAAEDTMLAYRAAQDVAIADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDAQDQLDES 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1864433 1866961 + evm.model.ptg000015l.290 HCH4g0290 542534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0290 252 FunFam 14-3-3 protein epsilon 8 252 - -
HCH4g0290 252 PIRSF 14-3-3 7 252 IPR000308 -
HCH4g0290 252 SUPERFAMILY 14-3-3 protein 10 244 IPR036815 -
HCH4g0290 252 PANTHER 14-3-3 PROTEIN 11 247 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
HCH4g0290 252 Coils Coil 17 37 - -
HCH4g0290 252 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
HCH4g0290 252 PRINTS 14-3-3 protein zeta signature 161 187 IPR000308 -
HCH4g0290 252 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
HCH4g0290 252 PRINTS 14-3-3 protein zeta signature 188 214 IPR000308 -
HCH4g0290 252 PRINTS 14-3-3 protein zeta signature 215 244 IPR000308 -
HCH4g0290 252 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
HCH4g0290 252 ProSitePatterns 14-3-3 proteins signature 2. 224 243 IPR023409 -
HCH4g0290 252 SMART 1433_4 11 251 IPR023410 -
HCH4g0290 252 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
HCH4g0290 252 Pfam 14-3-3 protein 17 242 IPR023410 -
HCH4g0290 252 Gene3D - 3 252 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0229 HCH-Chr4:1363839 HCH4g0290 HCH-Chr4:1864433 6.40E-98 dispersed
HCH4g0290 HCH-Chr4:1864433 HCH9g0347 HCH-Chr9:2161383 1.10E-102 dispersed
HCH12g0689 HCH-Chr12:4217141 HCH4g0290 HCH-Chr4:1864433 2.70E-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0290 K06630 - csv:101222827 461.07