Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0293 ATGGTGGTTAGAAAAGTCGGAAAGTACGAGATAGGAAGAACGATCGGAGAAGGAACCTTCGCTAAGGTTAAGTTCGCTCAAAACACTGAGACTGGCGAAAGTGTTGCTATGAAAGTTCTCGATCGTAGCACTATCATTAAACACAAGATGATTGATCAGATAAAGAAGGAAATCTCTATTATGAAGCTTGTGAGGCACCCTTACATTGTTCGTCTTCATGAGGTACTTGCAAGCCGTACTAAAATTTATATAATCTTGGAGTTCATCACCGGTGGTGAATTGTTTGACAAAATAGTTCATCACGGACGTCTTAGTGAAGCTGAATCTAGAAGATACTTCCAACAGCTTATTGATGGGGTAGATTTTTGCCACAGCAAGGGAGTATACCACAGAGATTTAAAGCCTGAAAATCTGCTACTCGATTCCCTAGATAATTTAAAGATTTCAGACTTTGGCTTGAGTGCATTGCCTGAACCAGGTGTTAGCCTACTTCGCACAACTTGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAAGGTTATGATGGTGCTATGGCAGATATATGGTCCTGTGGGGTAATCCTTTATGTGTTGATGGCAGGATATCTTCCATTTGATGACCTTGATCTCACCACCTTATATAGTAAGATTGAGAGAGCTGACTTTTCATGTCCATCTTGGTTCCCTGTGGGGGCAAAAGCTTTGATTCACAGAATATTAGACCCCAATCCTGCAACTCGAATTACCATGGAACAGATCAGAGAGGATGAGTGGTTCAAGAAAAGTTATGTTTCTGTCAAAATTCCCGAATGCGAAGATGTAAACCTGGATGATGTAAATGCCGTCTTTGATGATCCTGAGGAACAAATGACTGAAGAACAATGTGGAAACGAGGACACAGGCCCTCTTACCCTTAATGCATTTGATCTAATAATTCTATCTCAAGGCTTAAACCTAGCAACCATGTTTGATCGCGGCCAGGACTCTATGAACTATCAGACTCGGTTCGTCTGCCAAAAGCCTGCAAAGGTTATATTATCATCGATGGAAGTTGTAGCTCAATCGATGGGTTATAAGACGCACATTCGCAATTACAAGATGAGAGTAGAGGGCCCATCAGCAAATCAGACTTCTTATTTCTCAGTCATTATGGAAATTTTTGAAGTTGCTCCCACATTTTTTATGGTGGACATTCAGAAAGCAGCTGGTGATACCAGTGAGTACCTCAAGTTCTACAAGACCTTTTACAGCAATCTTGAAGACATCATCTGGAAACCTTCTGTTGACTCGGGCAAATTAAGGATCGCCAAGAACAAGAGTAAAAAACGTTAG 1341 41.31 MVVRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMIDQIKKEISIMKLVRHPYIVRLHEVLASRTKIYIILEFITGGELFDKIVHHGRLSEAESRRYFQQLIDGVDFCHSKGVYHRDLKPENLLLDSLDNLKISDFGLSALPEPGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADIWSCGVILYVLMAGYLPFDDLDLTTLYSKIERADFSCPSWFPVGAKALIHRILDPNPATRITMEQIREDEWFKKSYVSVKIPECEDVNLDDVNAVFDDPEEQMTEEQCGNEDTGPLTLNAFDLIILSQGLNLATMFDRGQDSMNYQTRFVCQKPAKVILSSMEVVAQSMGYKTHIRNYKMRVEGPSANQTSYFSVIMEIFEVAPTFFMVDIQKAAGDTSEYLKFYKTFYSNLEDIIWKPSVDSGKLRIAKNKSKKR 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1879796 1886231 - evm.model.ptg000015l.293 HCH4g0293 542537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0293 446 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
HCH4g0293 446 FunFam Non-specific serine/threonine protein kinase 2 303 - -
HCH4g0293 446 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0293 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH4g0293 446 CDD CIPK_C 309 416 - -
HCH4g0293 446 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
HCH4g0293 446 SMART serkin_6 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0293 446 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH4g0293 446 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH4g0293 446 Gene3D Kinase associated domain 1, KA1 307 428 - -
HCH4g0293 446 SUPERFAMILY Protein kinase-like (PK-like) 6 292 IPR011009 -
HCH4g0293 446 FunFam Non-specific serine/threonine protein kinase 1 88 - -
HCH4g0293 446 Pfam NAF domain 305 363 IPR004041 GO:0007165(InterPro)
HCH4g0293 446 FunFam Non-specific serine/threonine protein kinase 303 427 - -
HCH4g0293 446 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0293 HCH-Chr4:1879796 HCH7g1747 HCH-Chr7:49176292 4.00E-140 dispersed
HCH8g0843 HCH-Chr8:44916979 HCH4g0293 HCH-Chr4:1879796 2.40E-169 transposed
HCH14g0468 HCH-Chr14:33752454 HCH4g0293 HCH-Chr4:1879796 1.80E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81439 PF00069 Pkinase 7.40E-70 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0293 - - - 0.0