Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH4g0295 | ATGGAACTCGAAGAACACGACTTCTTAGAAGAATTACTATCTCTAAGAAGAGACACCGATTGGGACTCCATTATTCCCACAGAAACCAACGATTTTTTCAGCAATGCCTGGAATTTCGATTACTTCTTCGATCAAAACACCGCCAATTCTTCCCTACTCTCCGTTCCAGAAATGGAAATAATAGCGCCTCTTCCGTTTCAAGCAGATATGCCTGAGATTCCGATCACGGAACGAGAAGAAGAATTGGGTTTTATGGGGAACGAGATTCCGAATCTGGAGATTCAAAATGCATGTAAAATCGAGGCCAATCAATCACCGGAAATTCCAGTTTTGAGAGACGTGGGAAGAGGAAATTTCCCGATGGAAAGGAAGAATAGGTCGAAGAAATTGCAGGGTCAGCCATCGAAAAACTTAATGGCGGAGAGAAGGAGAAGGAAGCGCTTGAATGATCGTCTTTCTATGCTTCGATCCATCGTCCCCAAAATTAGCAAGATGGACAGAACTGCAATTCTAGCAGATGCAATTGAATACATGAAAGAATTGGTAGAGAAGATTGGGAGTTTACAGAAAGAAGTGGATTCAGAAGATATGAGGATATTGAAGGAAACAAAACCAACCGAATTCGCAGTGAGAAATTCACCAAAATTTGAGGTGGAAAAGAGAAATGGGAAAACGAGAATCGAGATAAGCTGTGGAGGGAAAGCAGGAATGCTATTATCAACAGTAAATACAATTGAAGCATTGGGTCTTGATATTCAACACTGTGTCGTTAGCTGCTTCAATGATTTTTCATTCCAAGCTTCTTGTTCTCAGGAGCTGAAACAGAGAACAGAAGTGAAGCCTGAAGAATTAAAGGAGGCCTTGTTTAGGAATGCAGGCTATGGAGGAAGCTCCTTGTAG | 900 | 41.56 | MELEEHDFLEELLSLRRDTDWDSIIPTETNDFFSNAWNFDYFFDQNTANSSLLSVPEMEIIAPLPFQADMPEIPITEREEELGFMGNEIPNLEIQNACKIEANQSPEIPVLRDVGRGNFPMERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELVEKIGSLQKEVDSEDMRILKETKPTEFAVRNSPKFEVEKRNGKTRIEISCGGKAGMLLSTVNTIEALGLDIQHCVVSCFNDFSFQASCSQELKQRTEVKPEELKEALFRNAGYGGSSL | 299 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1901838 | 1903633 | + | evm.model.ptg000015l.295 | HCH4g0295 | 542539 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH4g0295 | 299 | SMART | finulus | 138 | 187 | IPR011598 | GO:0046983(InterPro) | |
| HCH4g0295 | 299 | Coils | Coil | 171 | 198 | - | - | |
| HCH4g0295 | 299 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 136 | 194 | IPR036638 | GO:0046983(InterPro) | |
| HCH4g0295 | 299 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 132 | 181 | IPR011598 | GO:0046983(InterPro) | |
| HCH4g0295 | 299 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 116 | 294 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
| HCH4g0295 | 299 | Pfam | Helix-loop-helix DNA-binding domain | 139 | 181 | IPR011598 | GO:0046983(InterPro) | |
| HCH4g0295 | 299 | Gene3D | - | 122 | 196 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH3g0476 | HCH-Chr3:3076916 | HCH4g0295 | HCH-Chr4:1901838 | 1.90E-35 | dispersed | |
| HCH4g0295 | HCH-Chr4:1901838 | HCH9g0022 | HCH-Chr9:154219 | 1.10E-32 | dispersed | |
| HCH12g0718 | HCH-Chr12:4507731 | HCH4g0295 | HCH-Chr4:1901838 | 1.00E-82 | wgd | |
| HCH14g0426 | HCH-Chr14:33292730 | HCH4g0295 | HCH-Chr4:1901838 | 3.10E-68 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33413 | PF00010 | HLH | 3.30E-10 | No_clan | HCH | TF |
Pathway information