Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0295 ATGGAACTCGAAGAACACGACTTCTTAGAAGAATTACTATCTCTAAGAAGAGACACCGATTGGGACTCCATTATTCCCACAGAAACCAACGATTTTTTCAGCAATGCCTGGAATTTCGATTACTTCTTCGATCAAAACACCGCCAATTCTTCCCTACTCTCCGTTCCAGAAATGGAAATAATAGCGCCTCTTCCGTTTCAAGCAGATATGCCTGAGATTCCGATCACGGAACGAGAAGAAGAATTGGGTTTTATGGGGAACGAGATTCCGAATCTGGAGATTCAAAATGCATGTAAAATCGAGGCCAATCAATCACCGGAAATTCCAGTTTTGAGAGACGTGGGAAGAGGAAATTTCCCGATGGAAAGGAAGAATAGGTCGAAGAAATTGCAGGGTCAGCCATCGAAAAACTTAATGGCGGAGAGAAGGAGAAGGAAGCGCTTGAATGATCGTCTTTCTATGCTTCGATCCATCGTCCCCAAAATTAGCAAGATGGACAGAACTGCAATTCTAGCAGATGCAATTGAATACATGAAAGAATTGGTAGAGAAGATTGGGAGTTTACAGAAAGAAGTGGATTCAGAAGATATGAGGATATTGAAGGAAACAAAACCAACCGAATTCGCAGTGAGAAATTCACCAAAATTTGAGGTGGAAAAGAGAAATGGGAAAACGAGAATCGAGATAAGCTGTGGAGGGAAAGCAGGAATGCTATTATCAACAGTAAATACAATTGAAGCATTGGGTCTTGATATTCAACACTGTGTCGTTAGCTGCTTCAATGATTTTTCATTCCAAGCTTCTTGTTCTCAGGAGCTGAAACAGAGAACAGAAGTGAAGCCTGAAGAATTAAAGGAGGCCTTGTTTAGGAATGCAGGCTATGGAGGAAGCTCCTTGTAG 900 41.56 MELEEHDFLEELLSLRRDTDWDSIIPTETNDFFSNAWNFDYFFDQNTANSSLLSVPEMEIIAPLPFQADMPEIPITEREEELGFMGNEIPNLEIQNACKIEANQSPEIPVLRDVGRGNFPMERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELVEKIGSLQKEVDSEDMRILKETKPTEFAVRNSPKFEVEKRNGKTRIEISCGGKAGMLLSTVNTIEALGLDIQHCVVSCFNDFSFQASCSQELKQRTEVKPEELKEALFRNAGYGGSSL 299
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 1901838 1903633 + evm.model.ptg000015l.295 HCH4g0295 542539
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0295 299 SMART finulus 138 187 IPR011598 GO:0046983(InterPro)
HCH4g0295 299 Coils Coil 171 198 - -
HCH4g0295 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 194 IPR036638 GO:0046983(InterPro)
HCH4g0295 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983(InterPro)
HCH4g0295 299 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 116 294 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH4g0295 299 Pfam Helix-loop-helix DNA-binding domain 139 181 IPR011598 GO:0046983(InterPro)
HCH4g0295 299 Gene3D - 122 196 IPR036638 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0476 HCH-Chr3:3076916 HCH4g0295 HCH-Chr4:1901838 1.90E-35 dispersed
HCH4g0295 HCH-Chr4:1901838 HCH9g0022 HCH-Chr9:154219 1.10E-32 dispersed
HCH12g0718 HCH-Chr12:4507731 HCH4g0295 HCH-Chr4:1901838 1.00E-82 wgd
HCH14g0426 HCH-Chr14:33292730 HCH4g0295 HCH-Chr4:1901838 3.10E-68 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33413 PF00010 HLH 3.30E-10 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0295 - - - 0.0