Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH4g0301 ATGGTAATCCCGGAGGCAGAGCGCCACCGTACAAGGACACGTCAGACACAGTTTCGGGCGCCGGAAGCAGGAGGTGGTCCTAGGGTTCCGTTAAAACGGTTACTCCGTGTTTCATCGGTGGCGGCCGGAATTCAATTTGGGTGGGCCCTACAGCTATCTCTTTTAACTCCCTACATTCAAGAGCTCGGTATTCCTCATGCCTGGTCCAGTCTTATATGGCTTTGTGGACCGCTTTCCGGACTTTTTGTTCAGCCTCTCGTTGGTCTCGTTAGTGATCGGTGTACTAGCCGATTCGGTCGCCGGAGGCCGTTCATTGTCGTAGGTGCGCTTTTAATAATTCTCGCTGTTTTGATTATCGGTCACTCGGCTGATCTTGGCCGCTTGATGGGTGATCGAGGCGATGTGAGGCCGCGTGCAATCGGAATTTTTGTCGTTGGCTTTTGGATTTTGGATGTCGCTAATAATATGATTCAAGGTCCTTGTAGAGCTTTGCTTGCTGATCTTACCGGCAAGGATCATCGAAGAAATCGAGTGGCAAATGCTTATTTTTCTCTATTTATGGCTATTGGTAATATTATTGGATTTGCAGCTGGATCTTTTAGTGGCTGGTACAAGATTTTGCCATTTACTCTCACCTCCGCGTGTTCCATTAATTGTGCAAATCTCAAGTCAGCTTTCTTAATTGATATTCTGTTCATTGCAATTACAACATATTTGAGTGCATCAGCAGCCCAAGAATTACCTTTAAATTCAAGTGACAGATCCTCCTCGGTTGCGGAAGAAGGTGTGGAGCATTCAAGTAATACTTCAGAAGCTTTCCTCTTGGAGTTATTTGGGACTTTTAAATACTTCTCAAGTTATATATGGACTATCTTGCTTGTCACTTCCCTGACATGGATTGGATGGTTTCCATTTATTCTCTTTGATACGGATTGGATGGGTAGAGAGATTTATGGTGGCAAGCCAAATGAAGGACCGAGTTATAGTACCGGAGTAAGAATGGGAGCACTTGGTCTGATGTTTAATTCTGTTGTCCTTGGAATTACTTCATTATTTATGGAGAAGCTCTGCAGAAAATGGGGTGCTGGTTTTGTATGGGGATTTTCTAATATTTTCATGGCTCTATGCCTCCTTGCAATCCTAGTTGTTTCATATGTGGCAAAAAATATGGGCTATATAGGTCAGGAGCTCCCTCCAGATGGAATTGTAGCAGCTGCATTGATCATCTTTGCTCTTCTTGGTTCCCCTTTGGCAATTACTTACAGTGTCCCATATGCCATGATCTCCTCGCGTATTGAGTCTTTAGGACTTGGTCAAGGGTTATCTATGGGTGTCCTGAATTTAGCAATGGTTTTACCGCAGGTTGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTATTTGGTGGTGGAAACTCTCCAGCTTTTGCTGTGGCAGCACTTGCAGCCTTTGCAAGTGGACTCATTGCCATCTTGGCTCTTCCTCGGTCTGTTGCGCAGAAGCCCAGAACCCTCACATGA 1521 45.36 MVIPEAERHRTRTRQTQFRAPEAGGGPRVPLKRLLRVSSVAAGIQFGWALQLSLLTPYIQELGIPHAWSSLIWLCGPLSGLFVQPLVGLVSDRCTSRFGRRRPFIVVGALLIILAVLIIGHSADLGRLMGDRGDVRPRAIGIFVVGFWILDVANNMIQGPCRALLADLTGKDHRRNRVANAYFSLFMAIGNIIGFAAGSFSGWYKILPFTLTSACSINCANLKSAFLIDILFIAITTYLSASAAQELPLNSSDRSSSVAEEGVEHSSNTSEAFLLELFGTFKYFSSYIWTILLVTSLTWIGWFPFILFDTDWMGREIYGGKPNEGPSYSTGVRMGALGLMFNSVVLGITSLFMEKLCRKWGAGFVWGFSNIFMALCLLAILVVSYVAKNMGYIGQELPPDGIVAAALIIFALLGSPLAITYSVPYAMISSRIESLGLGQGLSMGVLNLAMVLPQVVVSLGSGPWDQLFGGGNSPAFAVAALAAFASGLIAILALPRSVAQKPRTLT 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1964281 1969608 - evm.model.ptg000015l.301 HCH4g0301 542545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH4g0301 506 MobiDBLite consensus disorder prediction 1 16 - -
HCH4g0301 506 PANTHER SUGAR TRANSPORTER 27 492 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
HCH4g0301 506 SUPERFAMILY MFS general substrate transporter 34 498 IPR036259 -
HCH4g0301 506 Pfam MFS/sugar transport protein 46 192 - -
HCH4g0301 506 CDD MFS_SLC45_SUC 34 492 - -
HCH4g0301 506 Gene3D MFS general substrate transporter like domains 32 494 IPR036259 -
HCH4g0301 506 FunFam Sucrose transport protein 28 494 - -
HCH4g0301 506 NCBIfam sucrose/proton symporter 29 497 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
HCH4g0301 506 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0002 HCH-Chr13:81253 HCH4g0301 HCH-Chr4:1964281 1.50E-135 dispersed
HCH13g0003 HCH-Chr13:89508 HCH4g0301 HCH-Chr4:1964281 1.60E-137 dispersed
HCH4g0301 HCH-Chr4:1964281 HCH4g1631 HCH-Chr4:15285488 6.30E-126 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH4g0301 K15378 - csv:101220384 781.171